2024-03-06 REL RCSB RCSB RCSB 2020-04-03 2021-03-10 2021-03-10 2024-03-06 Marsden Fund UOC1506 New Zealand NanR dimer-DNA hetero-complex Hariprasad V Horne C NanR dimer-DNA hetero-complex, transcriptional regulator, GntR superfamily, sialic acid, Neu5Ac, cooperativity., GENE REGULATION Horne CR Venugopal H Panjikar S Wood DM Henrickson A Brookes E North RA Murphy JM Friemann R Griffin MDW Ramm G Demeler B Dobson RCJ Mechanism of NanR gene repression and allosteric induction of bacterial sialic acid metabolism. Nat Commun UK 12 1988 1988 2021 33790291 doi:10.1038/s41467-021-22253-6 2041-1723 6wfq FULLOVERLAP NanR-DNA hetero-complex NanR-DNA hetero-complex 0 1 2 3
Dimeric NanR-DNA hetero-complex
Escherichia coli 0.0728 HTH-type transcriptional repressor NanR Escherichia coli 0.029566354 2 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LEVO MGLMNAFDSQTEDSSPAIGRNLRSRPLARKKLSEMVEEELEQMIRRREFGEGEQLPSERELMAFFNVGRPSVREALAALK RKGLVQINNGERARVSRPSADTIIGELSGMAKDFLSHPGGIAHFEQLRLFFESSLVRYAAEHATDEQIDLLAKALEINSQ SLDNNAAFIRSDVDFHRVLAEIPGNPIFMAIHVALLDWLIAARPTVTDQALHEHNNVSYQQHIAIVDAIRRHDPDEADRA LQSHLNSVSATWHAFGQTTNKKK J7QHT8 DNA (5'-D(P*GP*GP*TP*AP*TP*AP*AP*CP*AP*GP*GP*TP*AP*TP*A)-3') synthetic construct 0.00465706 1 (DG)(DG)(DT)(DA)(DT)(DA)(DA)(DC)(DA)(DG)(DG)(DT)(DA)(DT)(DA) DNA DNA (5'-D(P*TP*AP*TP*AP*CP*CP*TP*GP*TP*TP*AP*TP*AP*CP*C)-3') synthetic construct 0.0045189589999999995 1 (DT)(DA)(DT)(DA)(DC)(DC)(DT)(DG)(DT)(DT)(DA)(DT)(DA)(DC)(DC) DNA singleParticle particle 0.5 8.0 20.0 C4H11NO3 Tris 50.0 NaCl sodium chloride
20mM Tris-HCL, 150mM NaCl, 100 microM ZnCl2, pH 8.0
 Quantifoil, UltrAuFoil, R1.2/1.3 GOLD 300 GOLD HOLEY GLOW DISCHARGE AIR ETHANE 100 277.15 FEI VITROBOT MARK III
blotting conditions: 3 sec blotting time and -3 blot force..
TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 0.5 2.5 215000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Bioquantum 20 GATAN K2 SUMMIT (4k x 4k) COUNTING 1-20 1 3465 12.8 60.0 1 695465 C1 3.9 FSC 0.143 CUT-OFF RELION 3.0 141663 MAXIMUM LIKELIHOOD RELION 3.1_beta MAXIMUM LIKELIHOOD RELION 3.1_beta emd_21652.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 0 0 0 224 224 224 152.32 152.32 152.32 90.0 90.0 90.0 X Y Z -0.019632306 0.046468157 0.000044114655 0.0021020272 0.68 0.68 0.68 0.01 AUTHOR Relion local resolution filtered map. Sharpening B-factor -100 FLEXIBLE FIT REAL emd_21652_msk_1.map emd_21652_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 0 0 0 224 224 224 152.32 152.32 152.32 90.0 90.0 90.0 X Y Z -0.010179833 0.02363779 0.00014322711 0.0010522081 0.68 0.68 0.68 AUTHOR emd_21652_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 0 0 0 224 224 224 152.32 152.32 152.32 90.0 90.0 90.0 X Y Z -0.005236597 0.017767573 -0.000002608452 0.0008985532 0.68 0.68 0.68 AUTHOR emd_21652_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 0 0 0 224 224 224 152.32 152.32 152.32 90.0 90.0 90.0 X Y Z -0.006413823 0.017703211 -0.00000029101682 0.0009289885 0.68 0.68 0.68 AUTHOR emd_21652_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 0 0 0 224 224 224 152.32 152.32 152.32 90.0 90.0 90.0 X Y Z -0.0051202616 0.018240944 -0.0000016430944 0.00093149167 0.68 0.68 0.68 AUTHOR