<emd emdb_id="EMD-2158" version="3.0.1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
    <admin>
        <current_status>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2012-07-06</deposition>
            <header_release>2012-07-25</header_release>
            <map_release>2012-07-25</map_release>
            <update>2012-08-01</update>
        </key_dates>
        <title>Bacterial chemoreceptor arrays are hexagonally packed trimers of receptor dimers networked by rings of kinase and coupling proteins</title>
        <authors_list>
            <author>Briegel A</author>
            <author>Li X</author>
            <author>Bilwes AM</author>
            <author>Hughes KT</author>
            <author>Jensen GJ</author>
            <author>Crane BR</author>
        </authors_list>
        <keywords>chemotaxis, signal transduction, two-component systems</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Briegel A</author>
                    <author order="2">Li X</author>
                    <author order="3">Bilwes AM</author>
                    <author order="4">Hughes KT</author>
                    <author order="5">Jensen GJ</author>
                    <author order="6">Crane BR</author>
                    <title>Bacterial chemoreceptor arrays are hexagonally packed trimers of receptor dimers networked by rings of kinase and coupling proteins.</title>
                    <journal>PROC.NAT.ACAD.SCI.USA</journal>
                    <volume>109</volume>
                    <first_page>3766</first_page>
                    <last_page>3771</last_page>
                    <year>2012</year>
                    <external_references type="PUBMED">22355139</external_references>
                    <external_references type="DOI">doi:10.1073/pnas.1115719109</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
    </crossreferences>
    <sample>
        <name>Bacterial chemoreceptor arrays</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>Bacterial chemoreceptor arrays</name>
                <oligomeric_state>Trimers of receptor dimers lie at the vertices of a hexagonal lattice in a two-facing-two configuration surrounding a ring of alternating CheA regulatory domains (P5) and CheW couplers</oligomeric_state>
                <number_unique_components>3</number_unique_components>
            </sample_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>cheA</name>
                <natural_source database="NCBI">
                    <organism ncbi="562">Escherichia coli</organism>
                    <strain>MG1655</strain>
                    <cellular_location>Inner membrane</cellular_location>
                </natural_source>
                <recombinant_exp_flag>false</recombinant_exp_flag>
                <recombinant_expression database="NCBI" />
                <sequence />
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name>cheW</name>
                <natural_source database="NCBI">
                    <organism ncbi="562">Escherichia coli</organism>
                    <strain>MG1655</strain>
                    <cellular_location>Inner membrane</cellular_location>
                </natural_source>
                <recombinant_exp_flag>false</recombinant_exp_flag>
                <recombinant_expression database="NCBI" />
                <sequence />
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="3">
                <name>Chemoreceptors</name>
                <natural_source database="NCBI">
                    <organism ncbi="562">Escherichia coli</organism>
                    <strain>MG1655</strain>
                    <cellular_location>Inner membrane</cellular_location>
                </natural_source>
                <recombinant_exp_flag>false</recombinant_exp_flag>
                <recombinant_expression database="NCBI" />
                <sequence />
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>subtomogramAveraging</method>
            <specimen_preparation_list>
                <subtomogram_averaging_preparation preparation_id="1">
                    <buffer>
                        <details>Tryptone Broth (10 g Tryptone, 5 g NaCl per liter).
Cells were grown to exponential phase and incubated with penicillin for 1 hour prior to freezing</details>
                    </buffer>
                    <grid>
                        <details>R 2/2 copper/Rhodium grids, glow discharged</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">100</chamber_humidity>
                        <instrument>FEI VITROBOT MARK III</instrument>
                    </vitrification>
                </subtomogram_averaging_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <subtomogram_averaging_microscopy microscopy_id="1">
                    <microscope>FEI POLARA 300</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_cs units="mm">2.2</nominal_cs>
                    <nominal_defocus_min units="&#181;m">10.0</nominal_defocus_min>
                    <nominal_magnification>34000.0</nominal_magnification>
                    <specimen_holder_model>OTHER</specimen_holder_model>
                    <temperature>
                        <temperature_average units="K">77</temperature_average>
                    </temperature>
                    <specialist_optics>
                        <energy_filter>
                            <name>Gif 2002 hybrid (Gatan)</name>
                            <lower_energy_threshold units="eV">0.0</lower_energy_threshold>
                            <upper_energy_threshold units="eV">20.0</upper_energy_threshold>
                        </energy_filter>
                    </specialist_optics>
                    <date>2008-01-15</date>
                    <image_recording_list>
                        <image_recording>
                            <film_or_detector_model category="CCD">GATAN ULTRASCAN 4000 (4k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/&#8491;^2">150</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                    <tilt_series>
                        <axis1>
                            <min_angle units="deg">-70</min_angle>
                            <max_angle units="deg">58</max_angle>
                        </axis1>
                    </tilt_series>
                </subtomogram_averaging_microscopy>
            </microscopy_list>
            <subtomogram_averaging_processing image_processing_id="1">
                <details>CTF correction in imod. Average number of tilts used in the 3D reconstructions: 130. Average tomographic tilt angle increment: 1.</details>
                <final_reconstruction>
                    <software_list>
                        <software>
                            <name>imod</name>
                        </software>
                    </software_list>
                </final_reconstruction>
                <ctf_correction>
                    <details>imod</details>
                </ctf_correction>
            </subtomogram_averaging_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="305">
        <file>emd_2158.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>36</col>
            <row>36</row>
            <sec>60</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>36</x>
            <y>36</y>
            <z>60</z>
        </spacing>
        <cell>
            <a units="&#8491;">233.28</a>
            <b units="&#8491;">233.28</b>
            <c units="&#8491;">388.8</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>155.039993290000012</minimum>
            <maximum>168.389999390000014</maximum>
            <average>161.905410770000003</average>
            <std>1.43633509</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">6.48</x>
            <y units="&#8491;">6.48</y>
            <z units="&#8491;">6.48</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>164.0</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <annotation_details>3-fold average of wild-type E.coli (strain RP437) Chemoreceptor array sub-volumes (composed of 6 trimers-of receptor dimers)</annotation_details>
        <details>::::EMDATABANK.org::::EMD-2158::::</details>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <initial_model>
                    <access_code>3UR1</access_code>
                    <chain>
                        <chain_id>A</chain_id>
                    </chain>
                    <chain>
                        <chain_id>B</chain_id>
                    </chain>
                    <chain>
                        <chain_id>C</chain_id>
                    </chain>
                    <chain>
                        <chain_id>D</chain_id>
                    </chain>
                </initial_model>
                <refinement_protocol>RIGID BODY FIT</refinement_protocol>
                <details>Protocol: rigid body</details>
                <refinement_space>REAL</refinement_space>
            </modelling>
        </modelling_list>
    </interpretation>
</emd>