<?xml version='1.0' encoding='utf-8'?>
<emd emdb_id="EMD-21450" version="3.0.2.3" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_2_3/emdb.xsd">
    <admin>
        <current_status>
            <date>2021-03-03</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2020-02-24</deposition>
            <header_release>2020-03-04</header_release>
            <map_release>2021-03-03</map_release>
            <update>2021-03-03</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)</funding_body>
                <code>R01-AI120801</code>
                <country>United States</country>
            </grant_reference>
            <grant_reference>
                <funding_body>National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)</funding_body>
                <code>AI100645</code>
                <country>United States</country>
            </grant_reference>
            <grant_reference>
                <funding_body>National Institutes of Health/National Cancer Institute (NIH/NCI)</funding_body>
                <code>HHSN261200800001</code>
                <country>United States</country>
            </grant_reference>
        </grant_support>
        <title>CON-S ch.DS.SOSIP HIV trimer bound to DH845 Fab</title>
        <authors_list>
            <author>Cai F</author>
            <author>Chen WH</author>
            <author>Wu W</author>
            <author>Jones J</author>
            <author>Misook C</author>
            <author>Gohain N</author>
            <author>Shen X</author>
            <author>LaBranche C</author>
            <author>Eaton A</author>
            <author>Sutherland L</author>
            <author>Hernandez G</author>
            <author>Nelson RW</author>
            <author>Scearce R</author>
            <author>Seaman M</author>
            <author>Moody MA</author>
            <author>Santra S</author>
            <author>Wiehe KJ</author>
            <author>Tomaras GD</author>
            <author>Wagh K</author>
            <author>Korber B</author>
            <author>Bonsignori M</author>
            <author>Montefiori DC</author>
            <author>Haynes BF</author>
            <author>de Val N</author>
            <author>Joyce GM</author>
            <author>Saunders KO</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="false">
                    <author order="1">Cai F</author>
                    <author order="2">Chen WH</author>
                    <author order="3">Wu W</author>
                    <author order="4">Jones J</author>
                    <author order="5">Misook C</author>
                    <author order="6">Gohain N</author>
                    <author order="7">Shen X</author>
                    <author order="8">LaBranche C</author>
                    <author order="9">Eaton A</author>
                    <author order="10">Sutherland L</author>
                    <author order="11">Hernandez G</author>
                    <author order="12">Nelson RW</author>
                    <author order="13">Scearce R</author>
                    <author order="14">Seaman M</author>
                    <author order="15">Moody MA</author>
                    <author order="16">Santra S</author>
                    <author order="17">Wiehe KJ</author>
                    <author order="18">Tomaras GD</author>
                    <author order="19">Wagh K</author>
                    <author order="20">Korber B</author>
                    <author order="21">Bonsignori M</author>
                    <author order="22">Montefiori DC</author>
                    <author order="23">Haynes BF</author>
                    <author order="24">de Val N</author>
                    <author order="25">Joyce GM</author>
                    <author order="26">Saunders KO</author>
                    <title>HIV-1 vaccination elicits structurally and genetically-convergent neutralizing antibodies in non-human primates</title>
                    <journal_abbreviation>To Be Published</journal_abbreviation>
                    <external_references type="CSD">0353</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-21450</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>CON-S ch.DS.SOSIP in complex with DH845 Fab</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>CON-S ch.DS.SOSIP in complex with DH845 Fab</name>
                <parent>0</parent>
                <natural_source database="NCBI">
                    <organism ncbi="11676">Human immunodeficiency virus 1</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                    <recombinant_cell>HEK 293F cells</recombinant_cell>
                </recombinant_expression>
                <molecular_weight>
                    <experimental units="MDa">0.05</experimental>
                </molecular_weight>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">0.01</concentration>
                    <buffer>
                        <ph>8.0</ph>
                        <component>
                            <concentration units="mM">10.0</concentration>
                            <formula>TRIS</formula>
                            <name>tris</name>
                        </component>
                        <component>
                            <concentration units="mM">500.0</concentration>
                            <formula>NaCl</formula>
                            <name>sodium Chloride</name>
                        </component>
                    </buffer>
                    <staining>
                        <type>NEGATIVE</type>
                        <material>Uranyl Formate</material>
                        <details>grids were glow discharged and using 0.7% UF they were stained.</details>
                    </staining>
                    <grid>
                        <model>C-flat</model>
                        <material>COPPER</material>
                        <mesh>200</mesh>
                        <support_film film_type_id="1">
                            <film_material>CARBON</film_material>
                            <film_topology>CONTINUOUS</film_topology>
                        </support_film>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                            <atmosphere>AIR</atmosphere>
                        </pretreatment>
                    </grid>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI 20</microscope>
                    <illumination_mode>OTHER</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>LAB6</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <nominal_defocus_min units="µm">1.1</nominal_defocus_min>
                    <nominal_defocus_max units="µm">1.1</nominal_defocus_max>
                    <nominal_magnification>100000.0</nominal_magnification>
                    <specimen_holder_model>OTHER</specimen_holder_model>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>FEI EAGLE (2k x 2k)</film_or_detector_model>
                            <number_grids_imaged>1</number_grids_imaged>
                            <average_electron_dose_per_image units="e/Å^2">40.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <particle_selection>
                    <number_selected>8741</number_selected>
                </particle_selection>
                <final_reconstruction>
                    <applied_symmetry>
                        <point_group>C1</point_group>
                    </applied_symmetry>
                    <resolution res_type="BY AUTHOR" units="Å">21.0</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                        </software>
                    </software_list>
                    <number_images_used>7385</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>NOT APPLICABLE</type>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>NOT APPLICABLE</type>
                </final_angle_assignment>
                <final_three_d_classification>
                    <number_classes>4</number_classes>
                    <software_list>
                        <software>
                            <name>RELION</name>
                        </software>
                    </software_list>
                </final_three_d_classification>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="16385">
        <file>emd_21450.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>160</col>
            <row>160</row>
            <sec>160</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>160</x>
            <y>160</y>
            <z>160</z>
        </spacing>
        <cell>
            <a units="Å">350.40002</a>
            <b units="Å">350.40002</b>
            <c units="Å">350.40002</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.06335484</minimum>
            <maximum>0.09471264</maximum>
            <average>-0.0009790938</average>
            <std>0.0058698244</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">2.19</x>
            <y units="Å">2.19</y>
            <z units="Å">2.19</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.0136</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-21450::::</label>
        <annotation_details>CON-S ch.DS.SOSIP HIV trimer bound to DH845 Fab</annotation_details>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <refinement_protocol>AB INITIO MODEL</refinement_protocol>
            </modelling>
        </modelling_list>
    </interpretation>
</emd>