2020-09-02 REL RCSB RCSB RCSB 2020-02-21 2020-03-25 2020-09-02 2020-09-02 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) 1R01GM130051-01 United States Single Particle Cryo-EM Structure of the Natively Isolated Sec61, TMCO1, Nicalin, TMEM147, and CCDC47 Containing Ribosome-Translocon Complex McGilvray PT Anghel SA Sundaram A Trnka MJ Zhong F Hu H Burlingame AL Keenan RJ McGilvray PT Anghel SA Sundaram A Zhong F Trnka MJ Fuller JR Hu H Burlingame AL Keenan RJ An ER translocon for multi-pass membrane protein biogenesis. Elife US 9 2020 32820719 doi:10.7554/eLife.56889 2050-084X EMD-21427 associated EM volume EMD-21426 other EM volume EMD-21435 other EM volume Native complex of a translating ribosome and a novel translocon containing the Sec61 complex, TMEM147, NOMO, Nicalin, CCDC47, and TMCO1. Native complex of a translating ribosome and a novel translocon containing the Sec61 complex, TMEM147, NOMO, Nicalin, CCDC47, and TMCO1. 0 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 0.056 60S Subunit 1
60S ribosomal protein L9 60S ribosomal protein L8 60S ribosomal protein L7a 60S ribosomal protein L7 60S ribosomal protein L6 60S ribosomal protein L5 60S ribosomal protein L4 60S ribosomal protein L39 60S ribosomal protein L38 60S ribosomal protein L37a 60S ribosomal protein L36a 60S ribosomal protein L36 60S ribosomal protein L35a 60S ribosomal protein L35 60S ribosomal protein L34 60S ribosomal protein L32 60S ribosomal protein L31 60S ribosomal protein L30 60S ribosomal protein L3 60S ribosomal protein L28 60S ribosomal protein L27a 60S ribosomal protein L27 60S ribosomal protein L26 60S ribosomal protein L24 60S ribosomal protein L23a 60S ribosomal protein L23 60S ribosomal protein L22-like 1 60S ribosomal protein L22 60S ribosomal protein L21 60S ribosomal protein L19 60S ribosomal protein L18a 60S ribosomal protein L18 60S ribosomal protein L17 60S ribosomal protein L15 60S ribosomal protein L14 60S ribosomal protein L13a 60S ribosomal protein L13 60S ribosomal protein L12 60S ribosomal protein L11 60S ribosomal protein L10a 60S ribosomal protein L10 60S ribosomal export protein NMD3 60S acidic ribosomal protein P2 60S acidic ribosomal protein P1 60S acidic ribosomal protein P0-like 60S acidic ribosomal protein P0 Ubiquitin-60S ribosomal protein L40
Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 2.42 40S Subunit 1
40S ribosomal protein SA 40S ribosomal protein S9 40S ribosomal protein S8 40S ribosomal protein S7 40S ribosomal protein S6 40S ribosomal protein S5 40S ribosomal protein S4, X isoform 40S ribosomal protein S3a 40S ribosomal protein S30 40S ribosomal protein S3 40S ribosomal protein S29 40S ribosomal protein S28 40S ribosomal protein S27-like 40S ribosomal protein S27 40S ribosomal protein S26 40S ribosomal protein S25 40S ribosomal protein S24 40S ribosomal protein S23 40S ribosomal protein S21 40S ribosomal protein S20 40S ribosomal protein S2 40S ribosomal protein S19 40S ribosomal protein S18 40S ribosomal protein S17 40S ribosomal protein S16 40S ribosomal protein S15a 40S ribosomal protein S15 40S ribosomal protein S14 40S ribosomal protein S13 40S ribosomal protein S12 40S ribosomal protein S11 40S ribosomal protein S10 Ubiquitin-40S ribosomal protein S27a
Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 1.12 Translocon 1 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum Sec61 Complex 4
Sec61alpha, beta, and gamma
Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 0.07 TMCO1 4 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum NOMO-Nicalin-TMEM147 Complex 4 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum CCDC47 4 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S acidic ribosomal protein P0 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S acidic ribosomal protein P1 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S acidic ribosomal protein P2 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L10 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L10a 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L11 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L12 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L13 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L13a 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L14 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L15 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L17 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L18 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L18a 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L19 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L21 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L22 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L23 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L23a 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L24 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L26 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L27 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L27a 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L28 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L3 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L30 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L31 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L32 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L34 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L35 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L35a 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L36 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L36a 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L37a 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L38 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L39 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L4 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L5 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L6 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L7 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L7a 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L8 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 60S ribosomal protein L9 2 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S10 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S11 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S12 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S13 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S14 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S15 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S15a 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S16 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S17 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S18 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S19 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S2 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S21 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S23 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S24 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S25 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S26 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S27 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S27-like 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S28 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S29 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S3 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S30 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S3a 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S4, X isoform 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S5 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S6 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S7 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S8 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein S9 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum 40S ribosomal protein SA 3 Homo sapiens Kidney HEK293 Endoplasmic Reticulum Endoplasmic Reticulum singleParticle particle 0.4 7.4 150.0 C2H3KO2 potassium acetate 50.0 C8H18N2O4S HEPES, pH 7.4 5.0 MgCl2 magnesium chloride 0.25 C56H92O29 digitonin C-flat-1.2/1.3 COPPER 200 CARBON CONTINUOUS 2.0 GLOW DISCHARGE ETHANE 100 298 FEI VITROBOT MARK IV
Two filter papers were added to each arm, 2.5 microliters of sample were added to grids, and 0.5 second of drain time was allowed before vitrification..
Sample was well-dispersed on a thin (~2nm) carbon film.
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K3 (6k x 4k) COUNTING 1 5562 3.8 50.0 1 1049128 Gctf 0.5 EMD-5592
EMD-5592, Human ribosome low pass-filtered to 50 Angstrom resolution
 C1 3.4 FSC 0.143 CUT-OFF RELION 3.1 82684 MAXIMUM LIKELIHOOD RELION 3.1 MAXIMUM LIKELIHOOD RELION 3.1 9 RELION 3.1 emd_21427.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 500 500 500 0 0 500 500 500 500 680.0 680.0 680.0 90.0 90.0 90.0 X Y Z -0.014456131 0.04746323 0.00015776935 0.0019139652 1.36 1.36 1.36 0.0073 AUTHOR emd_21427_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 500 500 500 0 0 500 500 500 500 680.0 680.0 680.0 90.0 90.0 90.0 X Y Z -0.02305975 0.06163369 0.00008843494 0.0027313274 1.36 1.36 1.36 AUTHOR emd_21427_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 500 500 500 0 0 500 500 500 500 680.0 680.0 680.0 90.0 90.0 90.0 X Y Z -0.02345944 0.062030595 0.00003689127 0.0027309058 1.36 1.36 1.36 AUTHOR