2024-10-16 REL RCSB RCSB RCSB 2020-02-18 2020-02-26 2020-02-26 2024-10-16 American Cancer Society 440685 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R01-GM127776 United States Swiss National Science Foundation 177859 Switzerland Structure of the human clamp loader (Replication Factor C, RFC) bound to the sliding clamp (Proliferating Cell Nuclear Antigen, PCNA) Gaubitz C Liu X sliding clamp, DNA replication, AAA+, ATPase, clamp loader, DNA BINDING PROTEIN, REPLICATION Gaubitz C Liu X Magrino J Stone NP Landeck J Hedglin M Kelch BA Structure of the human clamp loader bound to the sliding clamp: a further twist on AAA+ mechanism Biorxiv US 2020 doi:10.1101/2020.02.18.953257 2692-8205 6vvo FULLOVERLAP Human Replication factor C (RFC) complex bound to the sliding clamp Proliferating cell nuclear antigen (PCNA) Human Replication factor C (RFC) complex bound to the sliding clamp Proliferating cell nuclear antigen (PCNA) 0 1 2 3 4 5 6
hRFC construct with a truncation of the A subunit's N-terminal region (missing residues 1-555)
Homo sapiens 0.31 Replication factor C subunit 1 Homo sapiens 0.066221227 1 Escherichia coli LEVO MDKEQVAEETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAAKFG KFSGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVAESLNNTSIKGFYSNGAASSVST KHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGL KIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVFAAGEETAHMSLVDKSDL FFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQAIYASVLPGELMRGYM TQFPTFPSWLGKHSSTGKHDRIVQDLALHMSLRTYSSKRTVNMDYLSLLRDALVQPLTSQGVDGVQDVVALMDTYYLMKE DFENIMEISSWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLQAIKASRHSTSPSLDSEYNEELNEDDSQSDEKDQDA IETDAMIKKKTKSSKPSKPEKDKEPRKGKGKSSKK P35251 Replication factor C subunit 2 Homo sapiens 0.039203207000000004 1 Escherichia coli LEVO MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGT GKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEI YSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTF SGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEI GYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS P35250 Replication factor C subunit 5 Homo sapiens 0.038545512000000004 1 Escherichia coli LEVO METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD KEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSK IIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTG HPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKI QLSSLIAAFQVTRDLIVAEA P40937 Replication factor C subunit 4 Homo sapiens 0.039751668 1 Escherichia coli LEVO MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADEPNLLFYGPP GTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQ AALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLS DKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLSQNC P35249 Replication factor C subunit 3 Homo sapiens 0.040614332 1 Escherichia coli LEVO MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVGVEKLRIEHQTITTPSKK KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCR LILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEH RLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF P40938 Proliferating cell nuclear antigen Homo sapiens 0.028795751999999997 3 Escherichia coli LEVO MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILK CAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVI SCAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYK IADMGHLKYYLAPKIEDEEGS P12004 MAGNESIUM ION 2.4305e-05 4 MG PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER 0.0005232469999999999 4 AGS ADENOSINE-5'-DIPHOSPHATE 0.000427201 1 ADP singleParticle particle 7.5 Quantifoil R0.6/1 GOLD GLOW DISCHARGE AIR ETHANE 95 283.15 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 GATAN K3 (6k x 4k) 1 3695 40.3
Quantifoil R2/2
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 GATAN K3 (6k x 4k) 1 7840 45.0
Quantifoil R0.6/1
 1 C1 3.4 FSC 0.143 CUT-OFF RELION 3.0.2
Multi-body refinement was used to generate 2 reconstructions that were combined
193934 RANDOM ASSIGNMENT cisTEM MAXIMUM LIKELIHOOD RELION 3.0.2 emd_21405.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 240 240 240 0 0 0 240 240 240 254.4 254.4 254.4 90.0 90.0 90.0 X Y Z -0.031003328 0.23912199 0.0012612386 0.00786336 1.06 1.06 1.06 0.044 AUTHOR Structure of the human clamp loader RFC bound to the sliding clamp Proliferating Cell Nuclear Antigen (PCNA) OTHER
Initial local fitting was peformed using UCSF Chimera, followed by manual model adjustment, then refinement in PHENIX.
REAL