Mammalian V-ATPase from rat brain collar and peripheral stalks rotational state 2 (from focused refinement)

2024-03-06 REL RCSB RCSB RCSB 2020-02-05 2020-02-19 2020-03-18 2024-03-06 Canadian Institutes of Health Research (CIHR) Canada Mammalian V-ATPase from rat brain collar and peripheral stalks rotational state 2 (from focused refinement) Abbas YM Rubinstein JL membrane protein complex, rotary atpase, PROTON TRANSPORT Abbas YM Wu D Bueler SA Robinson CV Rubinstein JL Structure of V-ATPase from the mammalian brain. Science US 367 1240 1246 2020 32165585 doi:10.1126/science.aaz2924 1095-9203 0038 SCIEAS 6vqj FULLOVERLAP Peripheral stalk and collar region of mammalian V-ATPase composed of subunits E1, G2, N-terminal domain of a1, and C1. Peripheral stalk and collar region of mammalian V-ATPase composed of subunits E1, G2, N-terminal domain of a1, and C1. 0 1 2 3 4 Rattus norvegicus V-type proton ATPase subunit C 1 Rattus norvegicus 0.043958453 1 LEVO MTEFWLISAPGEKTCQQTWEKLHAATTKNNNLAVSSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVL EDSKDKVQENLLASGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGS LLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFKKAVDDFRHK ARENKFIVRDFQYNEEEMRADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHIKALRVFVESVLRYGLPVNFQAML LQPNKKSVKKLREVLHELYKHLDSSAAAIIDAPMDIPGLNLSQQEYYPYVYYKIDCNLLEFK Q5FVI6 V-type proton ATPase subunit E 1 Rattus norvegicus 0.026167453 3 LEVO MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQAR LKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATK KDVDVQIDLEAYLPEDIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD Q6PCU2 V-type proton ATPase subunit G Rattus norvegicus 0.013690476 3 LEVO MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREQEFQSKQQAAMGSQGNLSAEVEQATRRQ VQGMQSSQQRNRERVLTQLLGMVCDVRPQVHPNYRITV Q8R2H0 V-type proton ATPase 116 kDa subunit a isoform 1 Rattus norvegicus 0.09642943799999999 1 LEVO MGELFRSEEMTLAQLFLQSEAAYCCVSELEELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIRKANIPIM DTGENPEVPFPRDMIDLEANFEKIENELKEINTNQEALKRNFLELTELKFILRKTQQFFDEMADPDLLEESSSLLEPNEM GRGAPLRLGFVAGVINRERIPTFERMLWRVCRGNVFLRQAEIENPLEDPVTGDYVHKSVFIIFFQGDQLKNRVKKICEGF RASLYPCPETPQERKEMASGVNTRIDDLQMVLNQTEDHRQRVLQAAAKNIRVWFIKVRKMKAIYHTLNLCNIDVTQKCLI AEVWCPVTDLDSIQFALRRGTEHSGSTVPSILNRMQTNQTPPTYNKTNKFTHGFQNIVDAYGIGTYREINPAPYTVITFP FLFAVMFGDFGHGILMTLFAVWMVLRESRILSQKNENEMFSMVFSGRYIILLMGLFSIYTGLIYNDCFSKSLNIFGSSWS VRPMFTIGNWTEETLLGSSVLQLNPAIPGVFGGPYPFGIDPIWNIATNKLTFLNSFKMKMSVILGIIHMLFGVSLSLFNH IYFKKPLNIYFGFIPEIIFMSSLFGYLVILIFYKWTAYDAHSSRNAPSLLIHFINMFLFSYPESGNAMLYSGQKGIQCFL IVVAMLCVPWMLLFKPLILRHQYLRKKHLGTLNFGGIRVGNGPTEEDAEIIQHDQLSTHSEDAEEPTEDEVFDFGDTMVH QAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVIHIGLHVRSLAGGLGLFFIFAAFATLTVAILLIMEGLSAF LHALRLHWVEFQNKFYTGTGFKFLPFSFEHIREGKFDE P25286 singleParticle particle 7.0 ETHANE-PROPANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 FEI FALCON III (4k x 4k) 43.0 1 C1 BACK PROJECTION 5.7 FSC 0.143 CUT-OFF cryoSPARC 74789 RANDOM ASSIGNMENT PROJECTION MATCHING emd_21352.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 340 340 340 0 0 0 340 340 340 360.4 360.4 360.4 90.0 90.0 90.0 X Y Z -1.1000527 2.7470732 0.00018316261 0.06963596 1.06 1.06 1.06 0.3 AUTHOR ::::EMDATABANK.org::::EMD-21352:::: Mammalian rat brain V-ATPase with SidK bound, focused refinement of the collar and membrane proximal regions conformational state 2