2024-03-06 REL RCSB RCSB RCSB 2020-02-05 2020-02-19 2020-03-18 2024-03-06 Canadian Institutes of Health Research (CIHR) Canada Mammalian V-ATPase from rat brain membrane-embedded Vo region rotational state 3 (from focused refinement) Abbas YM Rubinstein JL membrane protein complex, rotary atpase, PROTON TRANSPORT Abbas YM Wu D Bueler SA Robinson CV Rubinstein JL Structure of V-ATPase from the mammalian brain. Science US 367 1240 1246 2020 32165585 doi:10.1126/science.aaz2924 1095-9203 0038 SCIEAS 6vqh FULLOVERLAP Membrane embedded region of rat brain V-ATPase composed of subunits a, c", c1-9, d, e, f, atp6ap1, atp6ap2, as well as subunits F and part of subunit D from the V1 region. Membrane embedded region of rat brain V-ATPase composed of subunits a, c", c1-9, d, e, f, atp6ap1, atp6ap2, as well as subunits F and part of subunit D from the V1 region. 0 1 2 3 4 5 6 7 8 9 10 Rattus norvegicus ATPase H+-transporting V1 subunit D Rattus norvegicus 0.02835902 1 LEVO MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGEVMREAAFSLAEAKFTAGDFS TTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDE AIKITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFYRLKKIQEKKKIIKEKSEKDLERRRAAGEVMEPANLLAEEK DEDLLFE Q6P503 V-type proton ATPase subunit F Rattus norvegicus 0.013389262 1 LEVO MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDA HQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDLR P50408 V-type proton ATPase 116 kDa subunit a isoform 1 Rattus norvegicus 0.09642943799999999 1 LEVO MGELFRSEEMTLAQLFLQSEAAYCCVSELEELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIRKANIPIM DTGENPEVPFPRDMIDLEANFEKIENELKEINTNQEALKRNFLELTELKFILRKTQQFFDEMADPDLLEESSSLLEPNEM GRGAPLRLGFVAGVINRERIPTFERMLWRVCRGNVFLRQAEIENPLEDPVTGDYVHKSVFIIFFQGDQLKNRVKKICEGF RASLYPCPETPQERKEMASGVNTRIDDLQMVLNQTEDHRQRVLQAAAKNIRVWFIKVRKMKAIYHTLNLCNIDVTQKCLI AEVWCPVTDLDSIQFALRRGTEHSGSTVPSILNRMQTNQTPPTYNKTNKFTHGFQNIVDAYGIGTYREINPAPYTVITFP FLFAVMFGDFGHGILMTLFAVWMVLRESRILSQKNENEMFSMVFSGRYIILLMGLFSIYTGLIYNDCFSKSLNIFGSSWS VRPMFTIGNWTEETLLGSSVLQLNPAIPGVFGGPYPFGIDPIWNIATNKLTFLNSFKMKMSVILGIIHMLFGVSLSLFNH IYFKKPLNIYFGFIPEIIFMSSLFGYLVILIFYKWTAYDAHSSRNAPSLLIHFINMFLFSYPESGNAMLYSGQKGIQCFL IVVAMLCVPWMLLFKPLILRHQYLRKKHLGTLNFGGIRVGNGPTEEDAEIIQHDQLSTHSEDAEEPTEDEVFDFGDTMVH QAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVIHIGLHVRSLAGGLGLFFIFAAFATLTVAILLIMEGLSAF LHALRLHWVEFQNKFYTGTGFKFLPFSFEHIREGKFDE P25286 ATPase, H+ transporting, V0 subunit B (Predicted), isoform CRA_a Rattus norvegicus 0.021618553 1 LEVO MTGLELLYLGIFVAFWACMIVVGICYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGG VKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGS GAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD B0K022 V-type proton ATPase subunit S1 Rattus norvegicus 0.051160358999999996 1 LEVO MMAATVVSRIRTGTRWAPVLWLLLSLVAVAAAVAAEQQVPLVLWSSDRDLWAPVADTHEGHITSDMQLSTYLDPALELGP RNVLLFLQDKLSIEDFTAYGGVFGNKQDSAFSNLENALDLAPSSLVLPAVDWYAISTLTTYLQEKLGASPLHVDLATLKE LKLNASLPALLLIRLPYTASSGLMAPREVLTGNDEVIGQVLSTLESEDVPYTAALTAVRPSRVARDVAMVAGGLGRQLLQ TQVASPAIHPPVSYNDTAPRILFWAQNFSVAYKDEWKDLTSLTFGVENLNLTGSFWNDSFAMLSLTYEPLFGATVTFKFI LASRFYPVSARYWFTMERLEIHSNGSVAHFNVSQVTGPSIYSFHCEYVSSLSKKGSLLVTNVPSLWQMTLHNFQIQAFNV TGEQFSYASDCAGFFSPGIWMGLLTTLFMLFIFTYGLHMILSLKTMDRFDDRKGPTITLTQIV O54715 V-type proton ATPase subunit Rattus norvegicus 0.040341933999999996 1 LEVO MSFFPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASPLTVSVIDDKLKEKMVV EFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPL AAFFQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKL FPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVK LKEQECRNIVWIAECIAQRHRAKIDNYIPIF Q5M7T6 V-type proton ATPase subunit e 2 Rattus norvegicus 0.00920302 1 LEVO MTAHSFALPVIIFTTFWGLIGIAGPWFVPKGPNRGVIITMLVATAVCCYLFWLIAILAQLNPLFGPQLKNETIWYVRFLW E Q5EB76 Ribonuclease K Rattus norvegicus 0.011000004 1 LEVO MASLLCCGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQNIYNLYEQVSYNCFIAAGLYLLLG GFSFCQVRLNKRKEYMVR D3ZIM6 V-type proton ATPase 16 kDa proteolipid subunit Rattus norvegicus 0.015815833 9 LEVO MADIKNNPEYSSFFGVMGASSAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANSL TDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK P63081 Renin receptor Rattus norvegicus 0.039118578 1 LEVO MAVLVVLLSSLVSSALANEFSILRSPGSVVFRNGNWPIPGDRIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATIMVT VKGVDKLALPTGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYMVGKANSVFEDLSVTLRQLRNRLF QENSVLNSLPLNSLSRNNEVDLLFLSELQVLHDISSLLSRHKHLAKDHSPDLYSLELAGLDELGKRYGEDSEQFRDASRI LVDALQKFADDMYSLYGGNAVVELVTVKSFDTSLVRKSRTILETKQENTQSPYNLAYKYNLEYSVVFNLVLWIMTGLALA VIITSYNIWNMDPGYDSIIYRMTNQKIRMD Q6AXS4 singleParticle particle 7.0 ETHANE-PROPANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 FEI FALCON III (4k x 4k) 43.0 1 C1 BACK PROJECTION 4.4 FSC 0.143 CUT-OFF cryoSPARC 79654 RANDOM ASSIGNMENT PROJECTION MATCHING emd_21350.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 340 340 340 0 0 0 340 340 340 360.4 360.4 360.4 90.0 90.0 90.0 X Y Z -0.64924806 2.080614 -0.0018719407 0.05628428 1.06 1.06 1.06 0.5 AUTHOR Mammalian rat brain V-ATPase with SidK bound, focused refinement of the membrane embedded VO region conformational state 3