REL PDBe PDBe PDBe 2012-06-11 2012-11-21 2012-11-21 2013-01-09 The Structure of Lactococcal Phage TP901-1 by electron microscopy: the capsid Bebeacua C Lai L Skovgaard Vegge C Brondsted L van Heel M Veesler D Cambillau C EM, capsid, icosahedral, tp901, lactococcal phage Bebeacua C Lai L Skovgaard Vegge C Brondsted L van Heel M Veesler D Cambillau C Visualizing a complete Siphoviridae member by single-particle electron microscopy: the structure of lactococcal phage TP901-1. J.VIROL. 87 1061 1068 2013 23135714 doi:10.1128/JVI.02836-12 Icosahedral capsid of the lactococcal phage TP901-1 Icosahedral capsid of the lactococcal phage TP901-1
The sample corresponded to the full phage but only the capsid particles were selected.
Icosahedral 1 13 13 Lactococcus phage TP901-1
The sample contained the full phages with tail and baseplate. Only the capsids were selected.
Lactococcus phage TP901-1 Lactococcus lactis BACTERIA(EUBACTERIA) 13 13 600 7 VIRION STRAIN false false singleParticle particle 7.5
SM buffer (100 mM sodium chloride, 10 mM magnesium sulfate, 50 mM Tris [pH 7.5], and 0.01% [wt/vol] gelatin)
Quantifoil grids were glow discharged for 20 seconds
 ETHANE 100 120 FEI VITROBOT MARK I Blot for 2 seconds before plunging FEI/PHILIPS CM200FEG FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2.2 1.5 3.0 50000.0 GATAN LIQUID NITROGEN 80 105 Objective lens astigmatism was corrected at 130,000 times magnification. FEI 2008-06-01 GENERIC TVIPS (4k x 4k) 200 10 Nitrogen cooled
The particles were submitted to single-particle analysis with icosahedral symmetry using IMAGIC-V
Images
 I OTHER 15.0 OTHER IMAGIC 1500
ICOSAHEDRAL
 emd_2133.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 -128 -128 -128 256 256 256 819.2 819.2 819.2 90.0 90.0 90.0 X Y Z -2.31868172 8.4837513 0.10018362 0.67388016 3.2 3.2 3.2 0.1 AUTHOR Icosahedral reconstruction of the capsid of the phage TP901-1
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 1OHG RIGID BODY FIT Chimera
Protocol: Rigid body. Manually fitted 60 copies of the hexamer of HK97. Every hexamer was refined using Chimera.
REAL 10.0