<?xml version="1.0" encoding="UTF-8"?>
<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="https://ftp.ebi.ac.uk/pub/databases/em_ebi/emdb_related/emdb-schemas/emdb_schemas/v3/v3_0_9_2/emdb.xsd" version="3.0.9.2" emdb_id="EMD-21238">
    <admin>
        <current_status>
            <date>2024-03-06</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2020-01-27</deposition>
            <header_release>2020-02-26</header_release>
            <map_release>2020-09-09</map_release>
            <update>2024-03-06</update>
        </key_dates>
        <title>Chloroplast ATP synthase (C2, CF1FO)</title>
        <authors_list>
            <author>Yang J-H</author>
            <author>Williams D</author>
        </authors_list>
        <keywords>CF1FO, ATP synthase, PHOTOSYNTHESIS, PHOTOSYNTHESIS-TRANSLOCASE complex</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Yang JH</author>
                    <author order="2">Williams D</author>
                    <author order="3">Kandiah E</author>
                    <author order="4">Fromme P</author>
                    <author order="5">Chiu PL</author>
                    <title>Structural basis of redox modulation on chloroplast ATP synthase.</title>
                    <journal_abbreviation>Commun Biol</journal_abbreviation>
                    <country>UK</country>
                    <volume>3</volume>
                    <first_page>482</first_page>
                    <last_page>482</last_page>
                    <year>2020</year>
                    <external_references type="PUBMED">32879423</external_references>
                    <external_references type="DOI">doi:10.1038/s42003-020-01221-8</external_references>
                    <external_references type="ISSN">2399-3642</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>6vm4</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
                </relationship>
            </pdb_reference>
        </pdb_list>
    </crossreferences>
    <sample>
        <name>Chloroplast ATP synthase</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Chloroplast ATP synthase</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>2</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>3</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>4</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>5</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>6</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>7</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>8</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>9</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <details>Control rotary state 2</details>
                <natural_source database="NCBI">
                    <organism ncbi="3562">Spinacia oleracea</organism>
                    <tissue>Leaves</tissue>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.59435</theoretical>
                </molecular_weight>
            </complex_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>ATP synthase subunit alpha, chloroplastic</name>
                <natural_source database="NCBI">
                    <organism ncbi="3562">Spinacia oleracea</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.055505199</theoretical>
                </molecular_weight>
                <number_of_copies>3</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MATIRADEISKIIRERIEGYNREVKVVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGTIGIALNLESNNVGVVLMGDG
LMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPV
GRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAP
YTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIV
ETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKKVAGKLKLELAQFAELEAFAQFA
SDLDKATQNQLARGQRLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKPEFQEIISSTK
TFTEEAEALLKEAIQEQMERFLLQEQA</string>
                    <external_references type="UNIPROTKB">P06450</external_references>
                </sequence>
                <ec_number>7.1.2.2</ec_number>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name>ATP synthase subunit beta, chloroplastic</name>
                <natural_source database="NCBI">
                    <organism ncbi="3562">Spinacia oleracea</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.053797367</theoretical>
                </molecular_weight>
                <number_of_copies>3</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMS
ATDGLTRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFTQLDTKLSIFETGIKVVDLLA
PYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMN
EPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGS
ITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYEIAQRVKETLQRYKE
LQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDSLPEQAFYLVGNI
DEATAKAMNLEMESKLKK</string>
                    <external_references type="UNIPROTKB">P00825</external_references>
                </sequence>
                <ec_number>7.1.2.2</ec_number>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="3">
                <name>ATP synthase subunit b, chloroplastic</name>
                <natural_source database="NCBI">
                    <organism ncbi="3562">Spinacia oleracea</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.021013903999999996</theoretical>
                </molecular_weight>
                <number_of_copies>1</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MKNVTDSFVFLGHWPSAGSFGFNTDILATNLINLSVVLGVLIFFGKGVLSDLLDNRKQRILNTIRNSEELRGKAIEQLEK
ARARLKKVEMDADQFRVNGYSEIEREKMNLINSTYKTLEQFENYKNETIQFEQQKAINQVRQRVFQQALQGALGTLNSCL
NNELHLRTINANIGMFGAMNEITD</string>
                    <external_references type="UNIPROTKB">P06453</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="4">
                <name>ATP synthase subunit b', chloroplastic</name>
                <natural_source database="NCBI">
                    <organism ncbi="3562">Spinacia oleracea</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.024487596</theoretical>
                </molecular_weight>
                <number_of_copies>1</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MANMLVASSSKTLPTTTTTTITPKPKFPLLKTPLLKLSPPQLPPLKHLNLSVLKSAAITATPLTLSFLLPYPSLAEEIEK
ASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRDASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALN
KMKKETQLEVEAKLAEGRKKIEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPVS</string>
                    <external_references type="UNIPROTKB">P31853</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="5">
                <name>ATP synthase subunit a, chloroplastic</name>
                <natural_source database="NCBI">
                    <organism ncbi="3562">Spinacia oleracea</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.02710268</theoretical>
                </molecular_weight>
                <number_of_copies>1</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MNVLSYSINPLKGLYAISGVEVGQHFYWQIGGFQIHGQVLITSWVVIAILLGSAAIAVRSPQTIPTGGQNFFEYVLEFIR
DVSKTQIGEEYRPWVPFIGTMFLFIFVSNWSGALLPWKIIQLPHGELAAPTNDINTTVALALLTSVAYFYAGLTKKGLGY
FGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIG
ESLEGHH</string>
                    <external_references type="UNIPROTKB">P06451</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="6">
                <name>ATP synthase delta chain, chloroplastic</name>
                <natural_source database="NCBI">
                    <organism ncbi="3562">Spinacia oleracea</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.027708582</theoretical>
                </molecular_weight>
                <number_of_copies>1</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MAALQNPVALQSRTTTAVAALSTSSTTSTPKPFSLSFSSSTATFNPLRLKILTASKLTAKPRGGALGTRMVDSTASRYAS
ALADVADVTGTLEATNSDVEKLIRIFSEEPVYYFFANPVISIDNKRSVLDEIITTSGLQPHTANFINILIDSERINLVKE
ILNEFEDVFNKITGTEVAVVTSVVKLENDHLAQIAKGVQKITGAKNVRIKTVIDPSLVAGFTIRYGNEGSKLVDMSVKKQ
LEEIAAQLEMDDVTLAV</string>
                    <external_references type="UNIPROTKB">P11402</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="7">
                <name>ATP synthase epsilon chain, chloroplastic</name>
                <natural_source database="NCBI">
                    <organism ncbi="3562">Spinacia oleracea</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.014715707</theoretical>
                </molecular_weight>
                <number_of_copies>1</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MTLNLCVLTPNRSIWNSEVKEIILSTNSGQIGVLPNHAPTATAVDIGILRIRLNDQWLTLALMGGFARIGNNEITILVND
AERGSDIDPQEAQQTLEIAEANLRKAEGKRQKIEANLALRRARTRVEASNTISS</string>
                    <external_references type="UNIPROTKB">P00833</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="8">
                <name>ATP synthase gamma chain, chloroplastic</name>
                <natural_source database="NCBI">
                    <organism ncbi="3562">Spinacia oleracea</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.040119065999999995</theoretical>
                </molecular_weight>
                <number_of_copies>1</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MACSLSFSSSVSTFHLPTTTQSTQAPPNNATTLPTTNPIQCANLRELRDRIGSVKNTQKITEAMKLVAAAKVRRAQEAVV
NGRPFSETLVEVLYNMNEQLQTEDVDVPLTKIRTVKKVALMVVTGDRGLCGGFNNMLLKKAESRIAELKKLGVDYTIISI
GKKGNTYFIRRPEIPVDRYFDGTNLPTAKEAQAIADDVFSLFVSEEVDKVEMLYTKFVSLVKSDPVIHTLLPLSPKGEIC
DINGKCVDAAEDELFRLTTKEGKLTVERDMIKTETPAFSPILEFEQDPAQILDALLPLYLNSQILRALQESLASELAARM
TAMSNATDNANELKKTLSINYNRARQAKITGEILEIVAGANACV</string>
                    <external_references type="UNIPROTKB">P05435</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="9">
                <name>ATP synthase subunit c, chloroplastic</name>
                <natural_source database="NCBI">
                    <organism ncbi="3562">Spinacia oleracea</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.007977366</theoretical>
                </molecular_weight>
                <number_of_copies>14</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF
V</string>
                    <external_references type="UNIPROTKB">P69447</external_references>
                </sequence>
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>8.0</ph>
                    </buffer>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <c2_aperture_diameter units="µm">70.0</c2_aperture_diameter>
                    <nominal_cs units="mm">2.7</nominal_cs>
                    <nominal_defocus_min units="µm">-1.5</nominal_defocus_min>
                    <nominal_defocus_max units="µm">-4.0</nominal_defocus_max>
                    <nominal_magnification>22500.0</nominal_magnification>
                    <calibrated_magnification>48077.0</calibrated_magnification>
                    <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
                    <cooling_holder_cryogen>NITROGEN</cooling_holder_cryogen>
                    <alignment_procedure>
                        <basic/>
                    </alignment_procedure>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                            <detector_mode>SUPER-RESOLUTION</detector_mode>
                            <average_electron_dose_per_image units="e/Å^2">43.5</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <startup_model type_of_model="INSILICO MODEL"/>
                <final_reconstruction>
                    <applied_symmetry>
                        <point_group>C1</point_group>
                    </applied_symmetry>
                    <resolution units="Å" res_type="BY AUTHOR">7.08</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3.0.4</version>
                        </software>
                    </software_list>
                    <number_images_used>26291</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3.0.4</version>
                        </software>
                    </software_list>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3.0.4</version>
                        </software>
                    </software_list>
                </final_angle_assignment>
                <final_three_d_classification>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3.0.4</version>
                        </software>
                    </software_list>
                </final_three_d_classification>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="95552">
        <file>emd_21238.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>288</col>
            <row>288</row>
            <sec>288</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>288</x>
            <y>288</y>
            <z>288</z>
        </spacing>
        <cell>
            <a units="Å">339.84</a>
            <b units="Å">339.84</b>
            <c units="Å">339.84</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.008705234</minimum>
            <maximum>0.031148724</maximum>
            <average>0.00030832988</average>
            <std>0.0018054285</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">1.18</x>
            <y units="Å">1.18</y>
            <z units="Å">1.18</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.009</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-21238::::</label>
        <annotation_details>C2, CF1FO</annotation_details>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <refinement_protocol>BACKBONE TRACE</refinement_protocol>
            </modelling>
        </modelling_list>
    </interpretation>
</emd>
