2024-10-09 REL RCSB RCSB RCSB 2020-01-24 2020-03-11 2020-06-24 2024-10-09 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) F31 AI131873 United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) UM1 AI100663 United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) P01 AI110657 United States National Institutes of Health/Office of the Director S10 OD021634 United States Bill & Melinda Gates Foundation OPP1115782 United States BG505 SOSIP.v5.2 in complex with rhesus macaque Fab RM20E1 and PGT122 Fab Cottrell CA Ward AB Patel R Ward AB HIV, antibody, Fab, vaccine, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM complex Cottrell CA van Schooten J Bowman CA Yuan M Oyen D Shin M Morpurgo R van der Woude P van Breemen M Torres JL Patel R Gross J Sewall LM Copps J Ozorowski G Nogal B Sok D Rakasz EG Labranche C Vigdorovich V Christley S Carnathan DG Sather DN Montefiori D Silvestri G Burton DR Moore JP Wilson IA Sanders RW Ward AB van Gils MJ Mapping the immunogenic landscape of near-native HIV-1 envelope trimers in non-human primates. Plos Pathog. US 16 e1008753 e1008753 2020 32866207 doi:10.1371/journal.ppat.1008753 1553-7374 Cottrell CA van Schooten J Bowman CA Yuan M Oyen D Shin M Morpurgo R van der Woude P van Breemen M Torres JL Patel R Gross J Sewall LM Copps J Ozorowski G Sok D Rakasz EG Labranche C Vigdorovich V Christley S Sather DN Montefiori D Moore JP Burton DR Wilson IA Sanders RW Ward AB van Gils MJ Mapping the immunogenic landscape of native HIV-1 envelope trimers in non-human primates Biorxiv US 2020 doi:10.1101/2020.02.05.936096 2692-8205 6vlr FULLOVERLAP BG505 SOSIP.v5.2 in complex with rhesus macaque Fab RM20E1 BG505 SOSIP.v5.2 in complex with rhesus macaque Fab RM20E1 0 1 2 3 4 5 6 Human immunodeficiency virus 1 Envelope glycoprotein gp120 Human immunodeficiency virus 1 0.053268370999999995 3 Homo sapiens LEVO AENLWVTVYYGVPVWKDAETTLFCASDAKAYETKKHNVWATHCCVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIIS LWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKE YRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEV MIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQWFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRK HFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQ AMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVG Q2N0S6 BG505 SOSIPv5.2 gp41 Human immunodeficiency virus 1 0.017178548999999998 3 Homo sapiens LEVO AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPECQQHLLKLTVWGIKQLQARVLAVERYLRDQQ LLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD Q2N0S6 PGT122 Fab Heavy Chain Homo sapiens 0.014838730999999999 3 Homo sapiens LEVO QVHLQESGPGLVKPSETLSLTCNVSGTLVRDNYWSWIRQPLGKQPEWIGYVHDSGDTNYNPSLKSRVHLSLDKSKNLVSL RLTGVTAADSAIYYCATTKHGRRIYGVVAFKEWFTYFYMDVWGKGTSVTVSS PGT122 Fab Light Chain Homo sapiens 0.011510611999999998 3 Homo sapiens LEVO TFVSVAPGQTARITCGEESLGSRSVIWYQQRPGQAPSLIIYNNNDRPSGIPDRFSGSPGSTFGTTATLTITSVEAGDEAD YYCHIWDSRRPTNWVFGEGTTLIVLS RM20E1 Fab Heavy Chain Macaca mulatta 0.013878558000000001 1 Homo sapiens LEVO EVQLVQSEAEVKRPGESLKISCQTSGYNFPNYWITWVRQMPGKGLEWMGTIDPRDSDTKYSPSFQGQVTISADKSINTAY LQWTSLRASDSATYYCVMWVYILTTGNIWVDVWGPGVLVTVSS RM20E1 Fab Kappa Chain Macaca mulatta 0.012370759 1 Homo sapiens LEVO DVVMTQSPLSLPITPGQPASISCRSSQSLVHNNGNTYLTWYQQRPGQPPRRLIYQVSNRDSGVPDRFIGSGAGTDFTLKI SRVESEDVGIYYCGQITDFPYSFGQGTKVDIK 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 24 NAG singleParticle particle 7.4 ETHANE FEI VITROBOT MARK IV FEI TALOS ARCTICA FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 51.3 1 C1 4.42 FSC 0.143 CUT-OFF cryoSPARC 1 RELION 3.0 17010 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_21232.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 345.0 345.0 345.0 90.0 90.0 90.0 X Y Z -0.9749926 1.927799 0.0055316063 0.13906087 1.15 1.15 1.15 0.7 AUTHOR BG505 SOSIP.v5.2 in complex with Rhesus macaque Fab RM20E1 and PGT122 Fab OTHER REAL emd_21232_msk_1.map emd_21232_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 345.0 345.0 345.0 90.0 90.0 90.0 X Y Z -1.6967572 1.7147895 0.005231689 0.22110717 1.15 1.15 1.15 AUTHOR BG505 SOSIP.v5.2 in complex with Rhesus macaque Fab RM20E1 and PGT122 Fab emd_21232_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 345.0 345.0 345.0 90.0 90.0 90.0 X Y Z -1.7724879 1.8727261 0.0052399626 0.22119032 1.15 1.15 1.15 AUTHOR BG505 SOSIP.v5.2 in complex with Rhesus macaque Fab RM20E1 and PGT122 Fab