2026-08-12
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REPOSITORY
Metalloprotein remediation
STRUCTURE_SUMMARY
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RCSB
RCSB
2019-12-20
2020-01-29
2020-08-05
2026-08-12
Howard Hughes Medical Institute
United States
Cryo-EM structure of IRP2-FBXL5-SKP1 complex
Wang H
Shi H
E3 ligase, [2Fe-2S] cluster, Iron metabolism, LIGASE
Wang H
Shi H
Rajan M
Canarie ER
Hong S
Simoneschi D
Pagano M
Bush MF
Stoll S
Leibold EA
Zheng N
FBXL5 Regulates IRP2 Stability in Iron Homeostasis via an Oxygen-Responsive [2Fe2S] Cluster.
Mol.Cell
US
78
31
41.e5
2020
32126207
doi:10.1016/j.molcel.2020.02.011
1097-2765
2168
MOCEFL
6vcd
FULLOVERLAP
EMDB
EMD-21149
associated EM volume
Cryo-EM structure of IRP2-FBXL5-SKP1 complex
IRP2-FBLX5-SKP1 complex
IRP2-FBLX5-SKP1 complex
0
1
2
3
Homo sapiens
Iron-responsive element binding protein 2, isoform CRA_a
Homo sapiens
0.10516532799999999
1
Trichoplusia ni
LEVO
MDAPKAGYAFEYLIETLNDSSHKKFFDVSKLGTKYDVLPYSIRVLLEAAVRNCDGFLMKKEDVMNILDWKTKQSNVEVPF
FPARVLLQDFTGIPAMVDFAAMREAVKTLGGDPEKVHPACPTDLTVDHSLQIDFSKCAIQNAPNPGGGDLQKAGKLSPLK
VQPKKLPCRGQTTCRGSCDSGELGRNSGTFSSQIENTPILCPFHLQPVPEPETVLKNQEVEFGRNRERLQFFKWSSRVFK
NVAVIPPGTGMAHQINLEYLSRVVFEEKDLLFPDSVVGTDSHITMVNGLGILGWGVGGIETEAVMLGLPVSLTLPEVVGC
ELTGSSNPFVTSIDVVLGITKHLRQVGVAGKFVEFFGSGVSQLSIVDRTTIANMCPEYGAILSFFPVDNVTLKHLEHTGF
SKAKLESMETYLKAVKLFRNDQNSSGEPEYSQVIQINLNSIVPSVSGPKRPQDRVAVTDMKSDFQACLNEKVGFKGFQIA
AEKQKDIVSIHYEGSEYKLSHGSVVIAAVISCTNNCNPSVMLAAGLLAKKAVEAGLRVKPYIRTSLSPGSGMVTHYLSSS
GVLPYLSKLGFEIVGYGCSTCVGNTAPLSDAVLNAVKQGDLVTCGILSGNKNFEGRLCDCVRANYLASPPLVVAYAIAGT
VNIDFQTEPLGTDPTGKNIYLHDIWPSREEVHRVEEEHVILSMFKALKDKIEMGNKRWNSLEAPDSVLFPWDLKSTYIRC
PSFFDKLTKEPIALQAIENAHVLLYLGDSVTTDHISPAGSIARNSAAAKYLTNRGLTPREFNSYGARRGNDAVMTRGTFA
NIKLFNKFIGKPAPKTIHFPSGQTLDVFEAAELYQKEGIPLIILAGKKYGSGNSRDWAAKGPYLLGVKAVLAESYEKIHK
DHLIGIGIAPLQFLPGENADSLGLSGRETFSLTFPEELSPGITLNIQTSTGKVFSVIASFEDDVEITLYKHGGLLNFVAR
KFS
D3DW85
F-box/LRR-repeat protein 5
Homo sapiens
0.054832440999999996
1
Escherichia coli
LEVO
EHSTGITHLPPEVMLSIFSYLNPQELCRCSQVSMKWSQLTKTGSLWKHLYPVHWARGDWYSGPATELDTEPDDEWVKNRK
DESRAFHEWDEDADIDESEESAEESIAISIAQMEKRLLHGLIHNVLPYVGTSVKTLVLAYSSAVSSKMVRQILELCPNLE
HLDLTQTDISDSAFDSWSWLGCCQSLRHLDLSGCEKITDVALEKISRALGILTSHQSGFLKTSTSKITSTAWKNKDITMQ
STKQYACLHDLTNKGIGEEIDNEHPWTKPVSSENFTSPYVWMLDAEDLADIEDTVEWRHRNVESLCVMETASNFSCSTSG
CFSKDIVGLRTSVCWQQHCASPAFAYCGHSFCCTGTALRTMSSLPESSAMCRKAARTRLPRGKDLIYFGSEKSDQETGRV
LLFLSLSGCYQITDHGLRVLTLGGGLPYLEHLNLSGCLTITGAGLQDLVSACPSLNDEYFYYCDNINGPHADTASGCQNL
QCGFRACCRSGE
Q9UKA1
S-phase kinase-associated protein 1
Homo sapiens
0.018679965
1
Escherichia coli
LEVO
MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEK
RTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWC
EEK
P63208
FE2/S2 (INORGANIC) CLUSTER
0.00017581999999999998
1
FES
singleParticle
particle
8.0
unspecified
ETHANE
FEI TITAN KRIOS
OTHER
BRIGHT FIELD
FIELD EMISSION GUN
300
GATAN K2 SUMMIT (4k x 4k)
73.8
1
PHASE FLIPPING AND AMPLITUDE CORRECTION
generated by relion
C1
3.0
FSC 0.143 CUT-OFF
955060
MAXIMUM LIKELIHOOD
MAXIMUM LIKELIHOOD