<?xml version="1.0" encoding="UTF-8"?>
<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_10/emdb.xsd" emdb_id="EMD-21080" version="3.0.1.10">
    <admin>
        <current_status>
            <date>2020-09-16</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2019-12-06</deposition>
            <header_release>2020-01-15</header_release>
            <map_release>2020-08-19</map_release>
            <update>2020-09-16</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>National Institutes of Health/National Institute Of Allergy and Infectious Diseases</funding_body>
                <code>F31 AI131873</code>
                <country>United States</country>
            </grant_reference>
            <grant_reference>
                <funding_body>National Institutes of Health/National Institute Of Allergy and Infectious Diseases</funding_body>
                <code>P01 AI110657</code>
                <country>United States</country>
            </grant_reference>
            <grant_reference>
                <funding_body>National Institutes of Health/National Institute Of Allergy and Infectious Diseases</funding_body>
                <code>UM1 AI100663</code>
                <country>United States</country>
            </grant_reference>
            <grant_reference>
                <funding_body>Bill &amp; Melinda Gates Foundation</funding_body>
                <code>OPP1115782</code>
                <country>United States</country>
            </grant_reference>
            <grant_reference>
                <funding_body>National Institutes of Health/Office of the Director</funding_body>
                <code>S10 OD021634</code>
                <country>United States</country>
            </grant_reference>
        </grant_support>
        <title>RM19E Fab in complex with BG505 SOSIPv5.2</title>
        <authors_list>
            <author>Cottrell CA</author>
            <author>Torres JL</author>
            <author>Patel R</author>
            <author>Ward AB</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Cottrell CA</author>
                    <author order="2">van Schooten J</author>
                    <author order="3">Bowman CA</author>
                    <author order="4">Yuan M</author>
                    <author order="5">Oyen D</author>
                    <author order="6">Shin M</author>
                    <author order="7">Morpurgo R</author>
                    <author order="8">van der Woude P</author>
                    <author order="9">van Breemen M</author>
                    <author order="10">Torres JL</author>
                    <author order="11">Patel R</author>
                    <author order="12">Gross J</author>
                    <author order="13">Sewall LM</author>
                    <author order="14">Copps J</author>
                    <author order="15">Ozorowski G</author>
                    <author order="16">Nogal B</author>
                    <author order="17">Sok D</author>
                    <author order="18">Rakasz EG</author>
                    <author order="19">Labranche C</author>
                    <author order="20">Vigdorovich V</author>
                    <author order="21">Christley S</author>
                    <author order="22">Carnathan DG</author>
                    <author order="23">Sather DN</author>
                    <author order="24">Montefiori D</author>
                    <author order="25">Silvestri G</author>
                    <author order="26">Burton DR</author>
                    <author order="27">Moore JP</author>
                    <author order="28">Wilson IA</author>
                    <author order="29">Sanders RW</author>
                    <author order="30">Ward AB</author>
                    <author order="31">van Gils MJ</author>
                    <title>Mapping the immunogenic landscape of near-native HIV-1 envelope trimers in non-human primates.</title>
                    <journal_abbreviation>Plos Pathog.</journal_abbreviation>
                    <country>US</country>
                    <volume>16</volume>
                    <first_page>e1008753</first_page>
                    <last_page>e1008753</last_page>
                    <year>2020</year>
                    <external_references type="PUBMED">32866207</external_references>
                    <external_references type="DOI">doi:10.1371/journal.ppat.1008753</external_references>
                    <external_references type="ISSN">1553-7374</external_references>
                </journal_citation>
            </primary_citation>
            <secondary_citation>
                <journal_citation published="true">
                    <author order="32">Cottrell CA</author>
                    <author order="33">van Schooten J</author>
                    <author order="34">Bowman CA</author>
                    <author order="35">Yuan M</author>
                    <author order="36">Oyen D</author>
                    <author order="37">Shin M</author>
                    <author order="38">Morpurgo R</author>
                    <author order="39">van der Woude P</author>
                    <author order="40">van Breemen M</author>
                    <author order="41">Torres JL</author>
                    <author order="42">Patel R</author>
                    <author order="43">Gross J</author>
                    <author order="44">Sewall LM</author>
                    <author order="45">Copps J</author>
                    <author order="46">Ozorowski G</author>
                    <author order="47">Sok D</author>
                    <author order="48">Rakasz EG</author>
                    <author order="49">Labranche C</author>
                    <author order="50">Vigdorovich V</author>
                    <author order="51">Christley S</author>
                    <author order="52">Sather DN</author>
                    <author order="53">Montefiori D</author>
                    <author order="54">Moore JP</author>
                    <author order="55">Burton DR</author>
                    <author order="56">Wilson IA</author>
                    <author order="57">Sanders RW</author>
                    <author order="58">Ward AB</author>
                    <author order="59">van Gils MJ</author>
                    <title>Mapping the immunogenic landscape of native HIV-1 envelope trimers in non-human primates</title>
                    <journal_abbreviation>Biorxiv</journal_abbreviation>
                    <country>US</country>
                    <year>2020</year>
                    <external_references type="DOI">doi:10.1101/2020.02.05.936096</external_references>
                    <external_references type="CSD">0353</external_references>
                </journal_citation>
            </secondary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-21080</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>RM19N Fab in complex with BG505 SOSIPv5.2</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>RM19N Fab in complex with BG505 SOSIPv5.2</name>
                <parent>0</parent>
                <natural_source database="NCBI">
                    <organism ncbi="9544">Macaca mulatta</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                    <recombinant_cell>HEK293F</recombinant_cell>
                </recombinant_expression>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>7.4</ph>
                    </buffer>
                    <staining>
                        <type>NEGATIVE</type>
                        <material>Uranyl Formate</material>
                    </staining>
                    <grid>
                        <support_film film_type_id="1">
                            <film_material>CELLULOSE ACETATE</film_material>
                        </support_film>
                        <details>unspecified</details>
                    </grid>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TALOS ARCTICA</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <specimen_holder_model>SIDE ENTRY, EUCENTRIC</specimen_holder_model>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>FEI CETA (4k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/Å^2">25.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <particle_selection>
                    <number_selected>37952</number_selected>
                </particle_selection>
                <final_reconstruction>
                    <applied_symmetry>
                        <point_group>C3</point_group>
                    </applied_symmetry>
                    <resolution units="Å" res_type="BY AUTHOR">17.0</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3.0</version>
                        </software>
                    </software_list>
                    <number_images_used>21332</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="28312">
        <file>emd_21080.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>192</col>
            <row>192</row>
            <sec>192</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>192</x>
            <y>192</y>
            <z>192</z>
        </spacing>
        <cell>
            <a units="Å">380.16</a>
            <b units="Å">380.16</b>
            <c units="Å">380.16</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.037770186</minimum>
            <maximum>0.09457926</maximum>
            <average>0.0001196503</average>
            <std>0.005266941</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">1.98</x>
            <y units="Å">1.98</y>
            <z units="Å">1.98</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.024</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-21080::::</label>
        <annotation_details>RM19E Fab in complex with BG505 SOSIPv5.2</annotation_details>
    </map>
</emd>
