REL PDBe PDBe PDBe 2012-05-14 2012-06-14 2012-06-14 2013-01-09 Location of the dsRNA-dependent polymerase, VP1, in rotavirus particles Estrozi LF Settembre EC Goret G McClain B Zhang X Chen JZ Grigorieff N Harrison SC rotavirus, dsRNA-dependent, polymerase Estrozi LF Settembre EC Goret G McClain B Zhang X Chen JZ Grigorieff N Harrison SC Location of the dsRNA-dependent polymerase, VP1, in rotavirus particles. J.MOL.BIOL. 425 124 132 2013 23089332 doi:10.1016/j.jmb.2012.10.011 4au6 FULLOVERLAP http://emlab.rose2.brandeis.edu/rotavirusdlp Rotavirus DLP+VP1 Rotavirus DLP+VP1 780 molecules of VP6 form a DLP particle with 12 molecules of VP1, 120 molecules of VP2, 12 molecules of VP3 and 11 dsRNA molecules 5 Rotavirus polymerase (VP1) Bovine rotavirus Rotavirus 0.126326
The icosahedral 3D reconstruction of rotavirus DLP shows extra-density near the 5-fold axis corresponding to one copy of VP1 attached to the DLP inner surface.
11 false VP1 Bovine rotavirus Rotavirus false VP2 Bovine rotavirus Rotavirus false VP3 Bovine rotavirus Rotavirus false dsRNA Bovine rotavirus Rotavirus OTHER OTHER false singleParticle particle 5 7.4
Lacy carbon and C-flat
 ETHANE 30 HOMEMADE PLUNGER
Vitrification instrument: Home-made. Vitrification carried out in air at room temperature
Blot for 3 seconds before plunging FEI TECNAI F30 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2 1.1 3.5 59000.0 56540.0 GATAN LIQUID NITROGEN 90 Objective lens astigmatism was corrected 2007-06-01 KODAK SO-163 FILM ZEISS SCAI 7 386 15 1.0 8. Eucentric, side-entry
Phase flipping for each particle
 I OTHER 6.0 OTHER RIco, and, FPM 7000 emd_2100.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 140 279 140 0 -139 -139 279 140 140 237.5 473.30356 237.5 90.0 90.0 90.0 X Y Z -0.00405112 0.00763549 0.00004119 0.00069179 1.696428571 1.696428571 1.696428571 0.0004844 AUTHOR reconstruction of rotavirus DLP+VP1 (polymerase)
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 2R7O A RIGID BODY FIT URO and VEDA
Protocol: Rigid body. The Fourier coefficients of VP1 were downweighted by a factor 5 in order to prevent VP1 from being "attracted" by the stronger density of the VP2/6 layer during the fit. matrix 1 0.286272 -0.958148 -0.000156 150.76188 0.573968 0.171358 0.800748 -71.02608 -0.767209 -0.229322 0.599001 -168.57402 matrix 2 -0.084128 -0.546853 -0.832991 184.93534 0.025364 -0.836859 0.546831 15.73129 -0.996132 0.024876 0.084274 -147.45338 matrix 3 0.245240 0.395934 -0.884926 125.30383 -0.558295 -0.688567 -0.462799 80.75011 -0.792568 0.607546 0.052184 -184.30794 matrix 4 0.819204 0.567290 -0.084182 54.27816 -0.370407 0.411304 -0.832843 34.17286 -0.437839 0.713450 0.547070 -228.20418 matrix 5 0.844563 -0.269594 0.462637 70.01368 0.329383 0.942768 -0.051920 -59.62970 -0.422162 0.196234 0.885026 -218.47982
Correlation coefficient RECIPROCAL
emd_2100.png
emd_2100_fsc.xml