REL PDBe PDBe PDBe 2012-05-09 2012-05-17 2012-08-15 2012-09-26 Cryo-electron microscopy reconstruction of doublecortin-stabilised microtubules in absence of kinesin Liu JS Schubert CR Fu X Fourniol FJ Jaiswal JK Houdusse A Stultz CM Moores CA Walsh CA doublecortin, microtubule, Microtubule-Associated Protein Liu JS Schubert CR Fu X Fourniol FJ Jaiswal JK Houdusse A Stultz CM Moores CA Walsh CA Molecular basis for specific regulation of neuronal kinesin-3 motors by doublecortin family proteins. MOLECULAR CELL 47 707 721 2012 22857951 doi:10.1016/j.molcel.2012.06.025 4atu FULLOVERLAP Doublecortin-stabilised microtubules Doublecortin-stabilised microtubules 13-protofilament microtubule 3 tubulin alpha-1D chain Bos taurus cattle brain cytoplasm 0.05 heterodimer false IPR002452 doublecortin Homo sapiens Human 0.04 true Spodoptera frugiperda pFastBac IPR003533 tubulin beta-2B chain Bos taurus cattle brain cytoplasm 0.05 heterodimer false IPR013838 helical filament 6.8
20mM PIPES, 1mM EGTA, 3mM MgCl2, 1mM TCEP, 0.5mM GTP
 NEGATIVE
cryo-EM
300 mesh lacey carbon grids
 ETHANE 100 FEI VITROBOT MARK I FEI TECNAI F20 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2.0 0.9 3.6 50000.0 SIDE ENTRY, EUCENTRIC 93 Objective lens astigmatism was corrected at 150,000 times magnification 2010-10-01 KODAK SO-163 FILM ZEISS SCAI 17 8.
Particles were aligned using Spider and Frealign (Sindelar and Downing, 2010)
9.2 27.7 OTHER 8.3 FSC 0.5 CUT-OFF SPIDER, FREALIGN
A sub-selection of approximately 146,000 tubulin dimers (75% of total dataset) went into the final reconstruction
done with FREALIGN
 emd_2095.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 85 41 101 66 50 75 41 85 101 238.0 114.799995 282.8 90.0 90.0 90.0 X Y Z -8.86061192 12.475532530000001 0.57322699 2.0084734 2.8 2.8 2.8 1.6 AUTHOR Reconstruction of doublecortin-stabilised microtubules in absence of kinesin
::::EMDATABANK.org::::EMD-2095::::
 2XRP A B C D E F G H RIGID BODY FIT Chimera
Protocol: Rigid body
cross correlation REAL 1MJD FLEXIBLE FIT Chimera, Flex-EM
Protocol: flexible fitting. The EM map was zoned around the doublecortin density. The N-DC atomic model (1MJD model 11, aa 38-150) was extended at its C-terminus (aa 151-156) using Chimera. Flexible fitting was performed into the zoned around EM map. The core DC domain (aa 53-129) and the docked W146 region (aa 145-146) were treated as a single rigid body.
cross correlation REAL