<emd emdb_id="EMD-2088" version="3.0.1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
    <admin>
        <current_status>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2012-04-20</deposition>
            <header_release>2012-05-17</header_release>
            <map_release>2012-05-25</map_release>
            <update>2012-08-29</update>
        </key_dates>
        <title>Structures from COPI-coated vesicles: paired two-corner connection</title>
        <authors_list>
            <author>Faini M</author>
            <author>Prinz S</author>
            <author>Beck R</author>
            <author>Schorb M</author>
            <author>Riches JD</author>
            <author>Bacia K</author>
            <author>Brugger B</author>
            <author>Wieland FT</author>
            <author>Briggs JAG</author>
        </authors_list>
        <keywords>COPI-coated vesicles, subtomogram averaging, membrane trafficking, protein coat, coatomer, COPI</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Faini M</author>
                    <author order="2">Prinz S</author>
                    <author order="3">Beck R</author>
                    <author order="4">Schorb M</author>
                    <author order="5">Riches JD</author>
                    <author order="6">Bacia K</author>
                    <author order="7">Brugger B</author>
                    <author order="8">Wieland FT</author>
                    <author order="9">Briggs JAG</author>
                    <title>The structures of COPI-coated vesicles reveal alternate coatomer conformations and interactions.</title>
                    <journal>SCIENCE</journal>
                    <volume>336</volume>
                    <first_page>1451</first_page>
                    <last_page>1454</last_page>
                    <year>2012</year>
                    <external_references type="PUBMED">22628556</external_references>
                    <external_references type="DOI">doi:10.1126/science.1221443</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
    </crossreferences>
    <sample>
        <name>paired two-corner connection</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>paired two-corner connection</name>
                <number_unique_components>3</number_unique_components>
            </sample_supramolecule>
            <organelle_or_cellular_component_supramolecule supramolecule_id="1">
                <name>liposome membrane</name>
                <recombinant_exp_flag>false</recombinant_exp_flag>
                <natural_source database="NCBI">
                    <organism ncbi="32644">unidentified</organism>
                </natural_source>
                <recombinant_expression database="NCBI" />
            </organelle_or_cellular_component_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name synonym="COPI">Coatomer complex</name>
                <natural_source database="NCBI">
                    <organism ncbi="10090">Mus musculus</organism>
                    <synonym_organism>Mouse</synonym_organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.560</theoretical>
                </molecular_weight>
                <recombinant_exp_flag>true</recombinant_exp_flag>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="10469">unidentified baculovirus</recombinant_organism>
                </recombinant_expression>
                <sequence />
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name>Arf1</name>
                <natural_source database="NCBI">
                    <organism ncbi="4932">Saccharomyces cerevisiae</organism>
                    <synonym_organism>Baker's Yeast</synonym_organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.020</theoretical>
                </molecular_weight>
                <recombinant_exp_flag>true</recombinant_exp_flag>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                </recombinant_expression>
                <sequence />
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>subtomogramAveraging</method>
            <specimen_preparation_list>
                <subtomogram_averaging_preparation preparation_id="1">
                    <buffer>
                        <ph>7.5</ph>
                        <details>50mM Hepes , 50 mM KOAc, 1 mM MgCl2</details>
                    </buffer>
                    <grid>
                        <details>300 mesh copper grid with holey carbon support, glow discharged</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">100</chamber_humidity>
                        <chamber_temperature units="K">90</chamber_temperature>
                        <instrument>OTHER</instrument>
                        <method>Hand plunging</method>
                    </vitrification>
                </subtomogram_averaging_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <subtomogram_averaging_microscopy microscopy_id="1">
                    <microscope>FEI POLARA 300</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_cs units="mm">2.0</nominal_cs>
                    <nominal_defocus_min units="&#181;m">2.3</nominal_defocus_min>
                    <nominal_defocus_max units="&#181;m">4.3</nominal_defocus_max>
                    <nominal_magnification>27500.0</nominal_magnification>
                    <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
                    <temperature>
                        <temperature_min units="K">90</temperature_min>
                    </temperature>
                    <specialist_optics>
                        <energy_filter>
                            <name>Gatan GIF 2000</name>
                        </energy_filter>
                    </specialist_optics>
                    <date>2011-05-06</date>
                    <image_recording_list>
                        <image_recording>
                            <film_or_detector_model category="CCD">GENERIC CCD</film_or_detector_model>
                            <average_electron_dose_per_image units="e/&#8491;^2">60</average_electron_dose_per_image>
                            <bits_per_pixel>16.</bits_per_pixel>
                        </image_recording>
                    </image_recording_list>
                    <tilt_series>
                        <axis1>
                            <min_angle units="deg">-60</min_angle>
                            <max_angle units="deg">60</max_angle>
                        </axis1>
                    </tilt_series>
                </subtomogram_averaging_microscopy>
            </microscopy_list>
            <subtomogram_averaging_processing image_processing_id="1">
                <details>CTF correction was performed. Average number of tilts used in the 3D reconstructions: 41. Average tomographic tilt angle increment: 3.</details>
                <final_reconstruction>
                    <algorithm>OTHER</algorithm>
                    <resolution res_type="BY AUTHOR" units="&#8491;">34.0</resolution>
                    <resolution_method>OTHER</resolution_method>
                    <software_list>
                        <software>
                            <name>IMOD, TOM, package, Matlab</name>
                        </software>
                    </software_list>
                </final_reconstruction>
                <ctf_correction>
                    <details>CTF multiplication</details>
                </ctf_correction>
            </subtomogram_averaging_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="10720">
        <file>emd_2088.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>140</col>
            <row>140</row>
            <sec>140</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>140</x>
            <y>140</y>
            <z>140</z>
        </spacing>
        <cell>
            <a units="&#8491;">691.60004</a>
            <b units="&#8491;">691.60004</b>
            <c units="&#8491;">691.60004</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>0.0</minimum>
            <maximum>1.0</maximum>
            <average>0.34846309</average>
            <std>0.07484925</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">4.94</x>
            <y units="&#8491;">4.94</y>
            <z units="&#8491;">4.94</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.502</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <annotation_details>Reconstruction of a paired two-corner connection</annotation_details>
        <details>::::EMDATABANK.org::::EMD-2088::::</details>
    </map>
    <interpretation>
        <figure_list>
            <figure>
                <file>emd_2088.tif</file>
            </figure>
        </figure_list>
    </interpretation>
</emd>