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    <admin>
        <current_status>
            <date>2024-11-13</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2019-10-01</deposition>
            <header_release>2019-10-09</header_release>
            <map_release>2019-11-27</map_release>
            <update>2024-11-13</update>
        </key_dates>
        <title>Cryo-EM structure of human CALHM2 in an active/open state</title>
        <authors_list>
            <author>Lu W</author>
            <author>Du J</author>
        </authors_list>
        <keywords>calcium homeostasis modulator, CALHM2, TRANSPORT PROTEIN</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Choi W</author>
                    <author order="2">Clemente N</author>
                    <author order="3">Sun W</author>
                    <author order="4">Du J</author>
                    <author order="5">Lu W</author>
                    <title>The structures and gating mechanism of human calcium homeostasis modulator 2.</title>
                    <journal_abbreviation>Nature</journal_abbreviation>
                    <country>UK</country>
                    <volume>576</volume>
                    <first_page>163</first_page>
                    <last_page>167</last_page>
                    <year>2019</year>
                    <external_references type="PUBMED">31776515</external_references>
                    <external_references type="DOI">doi:10.1038/s41586-019-1781-3</external_references>
                    <external_references type="ISSN">1476-4687</external_references>
                    <external_references type="CSD">0006</external_references>
                    <external_references type="ASTM">NATUAS</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-20790</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>Human CALHM2 gap junction</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-20789</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>Human CALHM2 in a RUR-bound inhibited state</details>
            </emdb_reference>
        </emdb_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>6uiv</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
                </relationship>
            </pdb_reference>
        </pdb_list>
    </crossreferences>
    <sample>
        <name>human CALHM2</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>human CALHM2</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
            </complex_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>Calcium homeostasis modulator protein 2</name>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.037198676</theoretical>
                </molecular_weight>
                <number_of_copies>11</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MAALIAENFRFLSLFFKSKDVMIFNGLVALGTVGSQELFSVVAFHCPCSPARNYLYGLAAIGVPALVLFIIGIILNNHTW
NLVAECQHRRTKNCSAAPTFLLLSSILGRAAVAPVTWSVISLLRGEAYVCALSEFVDPSSLTAREEHFPSAHATEILARF
PCKENPDNLSDFREEVSRRLRYESQLFGWLLIGVVAILVFLTKCLKHYCSPLSYRQEAYWAQYRANEDQLFQRTAEVHSR
VLAANNVRRFFGFVALNKDDEELIANFPVEGTQPRPQWNAITGVYLYRENQGLPLYSRLHKWAQGLAGNGAAPDNVEMAL
LPSFESRLVPR</string>
                    <external_references type="UNIPROTKB">Q9HA72</external_references>
                </sequence>
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>8.0</ph>
                    </buffer>
                    <grid>
                        <details>unspecified</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_cs units="mm">2.7</nominal_cs>
                    <nominal_defocus_min units="µm">1.0</nominal_defocus_min>
                    <nominal_defocus_max units="µm">2.5</nominal_defocus_max>
                    <cooling_holder_cryogen>NITROGEN</cooling_holder_cryogen>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                            <detector_mode>SUPER-RESOLUTION</detector_mode>
                            <average_exposure_time units="s">8.0</average_exposure_time>
                            <average_electron_dose_per_image units="e/Å^2">54.4</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <particle_selection>
                    <number_selected>576174</number_selected>
                </particle_selection>
                <startup_model type_of_model="OTHER"/>
                <final_reconstruction>
                    <applied_symmetry>
                        <point_group>C11</point_group>
                    </applied_symmetry>
                    <resolution units="Å" res_type="BY AUTHOR">3.3</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3.0</version>
                        </software>
                    </software_list>
                    <number_images_used>84858</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3.0</version>
                        </software>
                    </software_list>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>300</version>
                        </software>
                    </software_list>
                </final_angle_assignment>
                <final_three_d_classification>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3.0</version>
                        </software>
                    </software_list>
                </final_three_d_classification>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
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        <file>emd_20788.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>340</col>
            <row>340</row>
            <sec>340</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>340</x>
            <y>340</y>
            <z>340</z>
        </spacing>
        <cell>
            <a units="Å">348.84</a>
            <b units="Å">348.84</b>
            <c units="Å">348.84</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.017790755</minimum>
            <maximum>0.054619186</maximum>
            <average>0.000024237006</average>
            <std>0.0016764055</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">1.026</x>
            <y units="Å">1.026</y>
            <z units="Å">1.026</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.0105</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-20788::::</label>
        <annotation_details>Final map refined with a soft solvent mask. Improved resolution for the well-defined parts of the protein, yet incomplete densities for the highly flexible regions such as S1.</annotation_details>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <refinement_protocol>AB INITIO MODEL</refinement_protocol>
                <refinement_space>REAL</refinement_space>
            </modelling>
        </modelling_list>
        <segmentation_list>
            <segmentation>
                <file>emd_20788_msk_1.map</file>
            </segmentation>
        </segmentation_list>
        <additional_map_list>
            <additional_map format="CCP4" size_kbytes="157217">
                <file>emd_20788_additional_2.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>340</col>
                    <row>340</row>
                    <sec>340</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>340</x>
                    <y>340</y>
                    <z>340</z>
                </spacing>
                <cell>
                    <a units="Å">348.84</a>
                    <b units="Å">348.84</b>
                    <c units="Å">348.84</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.024777053</minimum>
                    <maximum>0.047049828</maximum>
                    <average>0.000013716977</average>
                    <std>0.00046581242</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">1.026</x>
                    <y units="Å">1.026</y>
                    <z units="Å">1.026</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-20788::::</label>
                <annotation_details>Map of single subunit with vertical S1. This map is obtained through symmetry expansion and signal subtraction of single subunit, followed by 3D classification.</annotation_details>
            </additional_map>
            <additional_map format="CCP4" size_kbytes="157217">
                <file>emd_20788_additional_1.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>340</col>
                    <row>340</row>
                    <sec>340</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>340</x>
                    <y>340</y>
                    <z>340</z>
                </spacing>
                <cell>
                    <a units="Å">348.84</a>
                    <b units="Å">348.84</b>
                    <c units="Å">348.84</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.0048794327</minimum>
                    <maximum>0.035124995</maximum>
                    <average>0.00016817094</average>
                    <std>0.0016714797</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">1.026</x>
                    <y units="Å">1.026</y>
                    <z units="Å">1.026</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-20788::::</label>
                <annotation_details>Map refined without a soft solvent mask. Better visualization of the highly flexible regions such as S1.</annotation_details>
            </additional_map>
        </additional_map_list>
    </interpretation>
</emd>
