2025-06-04 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name DATABASE_REFERENCES citation _citation.journal_volume _citation.page_first DATABASE_REFERENCES chem_comp_atom chem_comp_bond database_2 _database_2.pdbx_DOI _database_2.pdbx_database_accession STRUCTURE_SUMMARY em_admin em_software pdbx_entry_details _em_admin.last_update _em_software.name _pdbx_entry_details.has_protein_modification RCSB RCSB 2019-09-26 2019-10-23 2019-11-20 2025-06-04 Howard Hughes Medical Institute (HHMI) United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) United States Hsu PL Shi H Complex, methyltransferase, epigenetics, chromatin, nucleosome, TRANSFERASE-STRUCTURAL PROTEIN-DNA complex Hsu PL Shi H Leonen C Kang J Chatterjee C Zheng N Mol.Cell US 76 712 2019 31733991 doi:10.1016/j.molcel.2019.10.013 1097-2765 2168 MOCEFL EMD-20767 other EM volume 6ugm FULLOVERLAP Yeast COMPASS eCM bound to an unmodified nucleosome Yeast COMPASS eCM bound to an unmodified nucleosome 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 0.45 nucleosome 1 1 2 3 4 5 6 7 11 Xenopus laevis COMPASS eCM 1 8 9 10 12 13 14 Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) Histone H3 Xenopus laevis 0.015275879000000001 2 Escherichia coli LEVO ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT DLRFQSSAVMALQEASEAYLVGLFEDTNLCGIHAKRVTIMPKDIQLARRIRGERA Q92133 Histone H4 Xenopus laevis 0.011263230999999999 2 Escherichia coli LEVO SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT VTAMDVVYALKRQGRTLYGFGG P62799 Histone H2A Xenopus laevis 0.01169465 2 Escherichia coli LEVO AKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDE ELNKLLGRVTIAQGGVLPNIQSVLLPK Q6AZJ8 Histone H2B Xenopus laevis 0.013848096999999998 1 Escherichia coli LEVO PEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRL AHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK A0A1L8FQ56 Histone H2B 1.1 Xenopus laevis 0.013834069999999999 1 Escherichia coli LEVO PEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKSRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRL AHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK P02281 DNA (146-MER) synthetic construct 0.045114746 1 (DC)(DT)(DC)(DG)(DA)(DG)(DA)(DA)(DT)(DC)(DC)(DC)(DG)(DG)(DT)(DG)(DC)(DC)(DG)(DA) (DG)(DG)(DC)(DC)(DG)(DC)(DT)(DC)(DA)(DA)(DT)(DT)(DG)(DG)(DT)(DC)(DG)(DT)(DA)(DG) (DA)(DC)(DA)(DG)(DC)(DT)(DC)(DT)(DA)(DG)(DC)(DA)(DC)(DC)(DG)(DC)(DT)(DT)(DA)(DA) (DA)(DC)(DG)(DC)(DA)(DC)(DG)(DT)(DA)(DC)(DG)(DC)(DG)(DC)(DT)(DG)(DT)(DC)(DC)(DC) (DC)(DC)(DG)(DC)(DG)(DT)(DT)(DT)(DT)(DA)(DA)(DC)(DC)(DG)(DC)(DC)(DA)(DA)(DG)(DG) (DG)(DG)(DA)(DT)(DT)(DA)(DC)(DT)(DC)(DC)(DC)(DT)(DA)(DG)(DT)(DC)(DT)(DC)(DC)(DA) (DG)(DG)(DC)(DA)(DC)(DG)(DT)(DG)(DT)(DC)(DA)(DG)(DA)(DT)(DA)(DT)(DA)(DT)(DA)(DC) (DA)(DT)(DC)(DC)(DG)(DA)(DT) DNA DNA (146-MER) synthetic construct 0.045305851999999994 1 (DA)(DT)(DC)(DG)(DG)(DA)(DT)(DG)(DT)(DA)(DT)(DA)(DT)(DA)(DT)(DC)(DT)(DG)(DA)(DC) (DA)(DC)(DG)(DT)(DG)(DC)(DC)(DT)(DG)(DG)(DA)(DG)(DA)(DC)(DT)(DA)(DG)(DG)(DG)(DA) (DG)(DT)(DA)(DA)(DT)(DC)(DC)(DC)(DC)(DT)(DT)(DG)(DG)(DC)(DG)(DG)(DT)(DT)(DA)(DA) (DA)(DA)(DC)(DG)(DC)(DG)(DG)(DG)(DG)(DG)(DA)(DC)(DA)(DG)(DC)(DG)(DC)(DG)(DT)(DA) (DC)(DG)(DT)(DG)(DC)(DG)(DT)(DT)(DT)(DA)(DA)(DG)(DC)(DG)(DG)(DT)(DG)(DC)(DT)(DA) (DG)(DA)(DG)(DC)(DT)(DG)(DT)(DC)(DT)(DA)(DC)(DG)(DA)(DC)(DC)(DA)(DA)(DT)(DT)(DG) (DA)(DG)(DC)(DG)(DG)(DC)(DC)(DT)(DC)(DG)(DG)(DC)(DA)(DC)(DC)(DG)(DG)(DG)(DA)(DT) (DT)(DC)(DT)(DC)(DG)(DA) DNA Swd3 Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37 0.036458879 1 Trichoplusia ni LEVO MCDLDSVSDLTLTLRMLQFDKQVLPASGKISTSCQISPDGELIAICQNTDMLVYEISSSKMMKLTTTHKECINCLCWSPD SKCIASGSEDFTVEITHIIYGRIRRLMGHTAPVISICYNNKGNILCSSSMDESIKEWHVLSGTALKTMSAHSDAVVSIDI PKFDSSILSSGSYDGLIRIFDTESGHCLKTLTYDKDWIAEDGVVPISTVKFSRNGKFLLVKSLDNVVKLWEYTRGTVVRT FLWPHQETKAKLKYNCGLELIYPQGKDPLVISGNDSGSMCVWNVYSKNLVQKIDEKHRNSPLISISASYDKVATLSLNGE CNLFRVH Q6CLY5 Histone-lysine N-methyltransferase, H3 lysine-4 specific Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37 0.031448504 1 Trichoplusia ni LEVO YQQIEQNGIIRDNQIALNEKEFDSTLASTTGSFIAEGFKKIPDKLKSSYLLHHRRLAQPLNTVHNHQEQNFMALNGTEST NQEADLEQDNHNASSRLNRVFQRRFQQDIEAQRAAIGFESDLLSLNQLTKRKKPVTFARSAIHNWGLYALEPIAAKEMII EYVGESIRQPVAEMREKRYIKSGIGSSYLFRIDENTVIDATKRGGIARFINHCCEPSCTAKIIKVDGRKRIVIYALRDIG TNEELTYDYKFERETDEGERLPCLCGAPSCKGFLN Q6CIT4 2.1.1.43 Swd1 Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37 0.049894656 1 Trichoplusia ni LEVO MANLLLQDPFGVLKEYPEKLTHTLEVPVAAVCVKFSPRGDYLAVGCSNGAIIIYDMDSLKPIAMLGTHSGAHTRSVQSVC WSNDGRYLWSSGRDWYAKLWDMTQPTKCFQQYKFDGPLWSCHVVRWNVCIVTVVEEPTAYVLTLTDRQNAFHCFPLLEQD QDISGHGYTLVACPHPTIESIIITGTSKGWINAFQLDLESGFEDKIRCCYEEKIANANIKQIIISPSGTRIAINGSDRTI RQYQLIVEDNESEGGSSHSVSIELEHKYQDIINRLQWNTIFFSNHSGEYLVASAHGSSAHDLYLWETSSGSLVRVLEGAD EELLDIDWNFYSMRIASNGFESGWVYMWSIVIPPKWSALAPDFEEVEENIDYQEKENEFDIMDDDNNLQAMTEAEEIAID LCTPEKYDVRGNDISMPSFVIPIDYEGVIIQQHWAHQEQ Q6CXF3 H3 N-terminus Xenopus laevis 0.000378444 1 Escherichia coli LEVO TMQ Spp1 Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37 0.03929786699999999 1 Trichoplusia ni LEVO MSLPSWCPRYDSRKHDPKTGEEVYCICKKPDTGELMVGCDGCDDWFHFSCLKIPEKYRDLVFSFYCSYCSAGITGPALIN GGKLPKTLWKRKCRLPECYTECDANSRSKYCSKKHAVQYVQSIVDKLNLPGVDKIALLRQLLNETTSLEEFKTLGRDKLP EVTSPLSKDQYSKLLENDQHLNKLINEHDELVSVKLSKLNEEDAVIEKYVNWIGEVNERLSPHFNQPTGRKKSKSASKVT ICGYHNEFTIPRSVEEFLDKLLQLKEDENSNITSVDGVCVKTKCAKHQDWITLSQNDLSEQKDSLENVKRRLDLLISVRT NQLRISFFEQEMSNRVLPGVKT Q6CRQ4 Bre2 Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37 0.047286996 1 Trichoplusia ni LEVO MSVPVIPYLDYDIVDLGSDIKKPDFPQLSESHRINEQQYYITEDTPLNKRNFMYQPCAANLMLDKLKYCGTDYFDKSSIN LMDRSDKLAFSLDDHSVSVSENCGWRSVRSDVCMKEGKIYWEVEVKNVSDTSHIRCGISRREASTETPVGCDFYGYSIRD KGLQVIHEGRLHTVLKPHEMQAGDRIGFLLTLPSLQSQSEQAMDYSLKRIQELNNDDSRTNKRNKKFNKEFYKFLLRSCE PTNVVRDQIAIRYKNQLFYESTDYVKTTKPEYYDNRDDMQKFYELENSSFEVFVNGVSHGIAFEGLTPFLPPFSELQYNE KFYLHHWNKRNVTKGIEIRNKYVNNNRLGYYATLSSFQGGTASIITEAMELKFLPKDVDIKTLNDIYNEQIASDIVWDLI DEIDT Q6CTQ1 Sdc1 Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37 0.014722625 2 Trichoplusia ni LEVO MSEPVMENMAPEDVVKLEKEEHIVPDIGVSSISTTEPLSPSGIPRESSGTVTSATAATTEREVSPKKELQIDHDRVDPVA MIGGSTTRRYLNEHVTKHLLEGMKLIAREKPEDPLRVLGQFLIDASEMNQKPSS Q6CPN6 S-ADENOSYLMETHIONINE 0.000398437 1 SAM ZINC ION 6.5409e-05 1 ZN singleParticle particle 7.5

unspecified

ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) 74.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION C1 3.7 FSC 0.143 CUT-OFF 100905 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD