2024-10-23 REL RCSB RCSB RCSB 2019-09-12 2020-02-05 2020-07-29 2024-10-23 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) 5R01GM108921-05 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) 1R01GM131216-01 United States American Heart Association 20POST35210394 United States Full length Glycine receptor reconstituted in lipid nanodisc in Gly-bound desensitized conformation Kumar A Basak S Chakrapani S Ions Ligands Receptors, Glycine receptor Recombinant Proteins Glycine, MEMBRANE PROTEIN Kumar A Basak S Rao S Gicheru Y Mayer ML Sansom MSP Chakrapani S Mechanisms of activation and desensitization of full-length glycine receptor in lipid nanodiscs. Nat Commun UK 11 3752 3752 2020 32719334 doi:10.1038/s41467-020-17364-5 2041-1723 Du J Lu W Wu S Cheng Y Gouaux E Glycine receptor mechanism elucidated by electron cryo-microscopy. Nature UK 526 224 229 2015 26344198 doi:10.1038/nature14853 1476-4687 0006 NATUAS 6ubt FULLOVERLAP Glycine receptor subunit alpha Z1 Glycine receptor subunit alpha Z1 0 1 Danio rerio 250 Glycine receptor subunit alphaZ1 Danio rerio 0.050821711 5 Spodoptera frugiperda LEVO MFALGIYLWETIVFFSLAASQQAAARKAASPMPPSEFLDKLMGKVSGYDARIRPNFKGPPVNVTCNIFINSFGSIAETTM DYRVNIFLRQQWNDPRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRISKNGNVLYSIRITLVL ACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWDEKGAVQVADGLTLPQFILKEEKDLRYCTKHYNTGKFTCIEARFHL ERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFS ALLEYAAVNFIARQHKELLRFQRRRRHLKEDEAGDGRFSFAAYGMGPACLQAKDGMAIKGNNNNAPTSTNPPEKTVEEMR KLFISRAKRIDTVSRVAFPLVFLIFNIFYWITYKIIRSEDIHKQ O93430 GLYCINE 7.506699999999999e-05 5 GLY singleParticle particle 0.1 8.0 50.0 4H11NO3 Tris 200.0 NaCl Sodium Chloride GLOW DISCHARGE 0.02
unspecified
 ETHANE 100 4 FEI VITROBOT MARK IV
3.5 ul of 0.1 mg/ml protein solution was applied on a grid in the Vitrobot MkIV chamber set to 100% RH at 4 degC for 30s and then blotted for 2 s and plunged.
Full length Zebrafish GlyR alpha1 homopentamer reconsituted in Nanodisc
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 -1.5 -2.5 80000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Bioquantum 20 GATAN K3 (6k x 4k) SUPER-RESOLUTION 4 5344 40.0 1 466000
Autopicking in relion 3.0
Apo conformation
 1 C5 3.55 FSC 0.143 CUT-OFF RELION 3.0 8255 ANGULAR RECONSTITUTION RELION 3.0 ANGULAR RECONSTITUTION RELION 3.0 5 emd_20715.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 324.0 324.0 324.0 90.0 90.0 90.0 X Y Z -0.01836576 0.05358592 0.00017109624 0.0019163593 1.08 1.08 1.08 0.0138 AUTHOR Refine3D Map generated during 3D autorefinement in Relion3.1 beta emd_20715_msk_1.map emd_20715_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 324.0 324.0 324.0 90.0 90.0 90.0 X Y Z -0.037661158 0.07662141 0.00018858818 0.0019691316 1.08 1.08 1.08 AUTHOR Postprocessmap generated using relion-postprocess masking out nanodisc belt emd_20715_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 324.0 324.0 324.0 90.0 90.0 90.0 X Y Z -0.016762452 0.05358592 0.00009947394 0.0014629379 1.08 1.08 1.08 AUTHOR Map generated using chimera zoning around 2A with entire model selected emd_20715_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 324.0 324.0 324.0 90.0 90.0 90.0 X Y Z -0.02981449 0.069843344 0.00012435838 0.0030071198 1.08 1.08 1.08 AUTHOR Unfiltered maps reconstructed independently each using half of the experimental data emd_20715_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 324.0 324.0 324.0 90.0 90.0 90.0 X Y Z -0.0317698 0.06457088 0.00017898952 0.0028819868 1.08 1.08 1.08 AUTHOR Unfiltered maps reconstructed independently each using half of the experimental data