2024-03-20 REL RCSB RCSB RCSB 2019-09-06 2019-09-18 2019-09-18 2024-03-20 Adeno-associated virus strain AAVhu.37 capsid icosahedral structure Kaelber JT Yost SA capsid, blood-brain barrier penetration, VIRUS Kaelber JT Yost SA Webber KA Firlar E Liu Y Danos O Mercer AC Structure of the AAVhu.37 capsid by cryoelectron microscopy. Acta Crystallogr.,Sect.F US 76 58 64 2020 32039886 doi:10.1107/S2053230X20000308 2053-230X ACSFEN 6u95 FULLOVERLAP Adeno-associated virus Adeno-associated virus 0 1
Virions containing GFP-encoding ssDNA were assembled in transfected HEK293T helper cells.
Adeno-associated virus hu.37 Homo sapiens 5 250.0 1 VIRION STRAIN false false Capsid protein VP1 Adeno-associated virus 0.081528852 1 Homo sapiens LEVO AADGYLPDWLEDNLSEGIREWWDLKPGAPKPKANQQKQDDGRGLVLPGYKYLGPFNGLDKGEPVNAADAAALEHDKAYDQ QLKAGDNPYLRYNHADAEFQERLQEDTSFGGNLGRAVFQAKKRVLEPLGLVEEAAKTAPGKKRPVEPSPQRSPDSSTGIG KKGQQPAKKRLNFGQTGDSESVPDPQPIGEPPAGPSGLGSGTMAAGGGAPMADNNEGADGVGSSSGNWHCDSTWLGDRVI TTSTRTWALPTYNNHLYKQISNGTSGGSTNDNTYFGYSTPWGYFDFNRFHCHFSPRDWQRLINNNWGFRPKRLSFKLFNI QVKEVTQNEGTKTIANNLTSTIQVFTDSEYQLPYVLGSAHQGCLPPFPADVFMIPQYGYLTLNNGSQAVGRSSFYCLEYF PSQMLRTGNNFEFSYTFEDVPFHSSYAHSQSLDRLMNPLIDQYLYYLSRTQSTGGTQGTQQLLFSQAGPANMSAQAKNWL PGPCYRQQRVSTTLSQNNNSNFAWTGATKYHLNGRDSLVNPGVAMATHKDDEERFFPSSGVLMFGKQGAGRDNVDYSSVM LTSEEEIKTTNPVATEQYGVVADNLQQTNTGPIVGNVNSQGALPGMVWQNRDVYLQGPIWAKIPHTDGNFHPSPLMGGFG LKHPPPQILIKNTPVPADPPTTFSQAKLASFITQYSTGQVSVEIEWELQKENSKRWNPEIQYTSNYYKSTNVDFAVNTEG TYSEPRPIGTRYLTRNL Q6JC19 singleParticle particle 7.4 9.0 NaCl sodium chloride 0.144 KH2PO4 potassium phosphate dibasic 0.795 Na2HPO4 sodium phosphate monobasic
PBS
 Quantifoil R2/1 COPPER 200 CARBON CONTINUOUS 2.8600000000000003 GLOW DISCHARGE AIR 0.037 ETHANE 100 298 LEICA EM GP
Whatman #1 filter paper, 4.5s blot. 3.5 microliters specimen applied..
approx. 7*10^13 genome copies per mL
 FEI TALOS ARCTICA FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 50.0 2.7 0.535 1.584 130000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN none none GIF Bioquantum 20 GATAN K2 SUMMIT (4k x 4k) COUNTING 3838 3710 1-25 1 5.0 1.31
collected in superresolution mode
 1 53545
ab initio
 I FOURIER SPACE 2.56 FSC 0.143 CUT-OFF cryoSPARC 2.9.0
2.8 unmasked, 2.53 masked, 2.56 with noise-substitution ("true FSC"). 2.7 3-bit unmasked.
41850 PROJECTION MATCHING cryoSPARC 2.9.0 PROJECTION MATCHING cryoSPARC 2.9.0 cryoSPARC 2.9.0 emd_20693.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 560 560 560 -280 -280 -280 560 560 560 392.36398 392.36398 392.36398 90.0 90.0 90.0 X Y Z -0.7067622 1.3878311 0.043222647 0.2187148 0.70065 0.70065 0.70065 0.75 AUTHOR icosahedrally-averaged map of AAVhu.37 2QA0 A 220-738 PDB experimental model FLEXIBLE FIT emd_20693_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 560 560 560 -280 -280 -280 560 560 560 392.36398 392.36398 392.36398 90.0 90.0 90.0 X Y Z -1.0287962 1.5579377 0.043315865 0.22755516 0.70065 0.70065 0.70065 AUTHOR half A emd_20693_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 560 560 560 -280 -280 -280 560 560 560 392.36398 392.36398 392.36398 90.0 90.0 90.0 X Y Z -1.1054964 1.5416021 0.043129433 0.22740273 0.70065 0.70065 0.70065 AUTHOR half B