<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-2053" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2012-03-15</deposition>
         <header_release>2012-03-22</header_release>
         <map_release>2012-03-22</map_release>
         <update>2012-03-22</update>
      </key_dates>
      <title>Electron Microscopy of THO complex</title>
      <authors_list>
         <author>Pena A</author>
         <author>Gewartowski K</author>
         <author>Mroczek S</author>
         <author>Cuellar J</author>
         <author>Szykowska A</author>
         <author>Prokop A</author>
         <author>Czarnocki-Cieciura M</author>
         <author>Piwowarski J</author>
         <author>Tous C</author>
         <author>Aguilera A</author>
         <author>Carrascosa JL</author>
         <author>Valpuesta JM</author>
         <author>Dziembowski A</author>
      </authors_list>
      <keywords>mRNA export, heterotetramer, mRNP quality control, croissant-like structure, beta-propeller, unfolded regions</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Pena A</author>
               <author order="2">Gewartowski K</author>
               <author order="3">Mroczek S</author>
               <author order="4">Cuellar J</author>
               <author order="5">Szykowska A</author>
               <author order="6">Prokop A</author>
               <author order="7">Czarnocki-Cieciura M</author>
               <author order="8">Piwowarski J</author>
               <author order="9">Tous C</author>
               <author order="10">Aguilera A</author>
               <author order="11">Carrascosa JL</author>
               <author order="12">Valpuesta JM</author>
               <author order="13">Dziembowski A</author>
               <title>Architecture and nucleic acids recognition mechanism of the THO complex, an mRNP assembly factor.</title>
               <journal>EMBO J.</journal>
               <volume>31</volume>
               <first_page>1605</first_page>
               <last_page>1616</last_page>
               <year>2012</year>
               <external_references type="PUBMED">22314234</external_references>
               <external_references type="DOI">doi:10.1038/emboj.2012.10</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Yeast five-subunit THO complex</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Yeast five-subunit THO complex</name>
            <oligomeric_state>One heteropentamer composed of Tho2, Hpr1, Mft1, Thp2 an Tex1 subunits</oligomeric_state>
            <number_unique_components>5</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">395</experimental>
               <theoretical units="MDa">395</theoretical>
               <method>Gel Filtration and Mass Spectrometry</method>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="Rlr1">Tho2</name>
            <natural_source database="NCBI">
               <organism ncbi="4932">Saccharomyces cerevisiae</organism>
               <synonym_organism>Baker's Yeast</synonym_organism>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">180</experimental>
               <theoretical units="MDa">180</theoretical>
            </molecular_weight>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="4932">Saccharomyces cerevisiae</recombinant_organism>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="2">
            <name>Hpr1</name>
            <natural_source database="NCBI">
               <organism ncbi="4932">Saccharomyces cerevisiae</organism>
               <synonym_organism>Baker's Yeast</synonym_organism>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">90</experimental>
               <theoretical units="MDa">90</theoretical>
            </molecular_weight>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="4932">Saccharomyces cerevisiae</recombinant_organism>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="3">
            <name synonym="MFT52">Mft1</name>
            <natural_source database="NCBI">
               <organism ncbi="4932">Saccharomyces cerevisiae</organism>
               <synonym_organism>Baker's Yeast</synonym_organism>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">45</experimental>
               <theoretical units="MDa">45</theoretical>
            </molecular_weight>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="4932">Saccharomyces cerevisiae</recombinant_organism>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="4">
            <name>Thp2</name>
            <natural_source database="NCBI">
               <organism ncbi="4932">Saccharomyces cerevisiae</organism>
               <synonym_organism>Baker's Yeast</synonym_organism>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">30</experimental>
               <theoretical units="MDa">30</theoretical>
            </molecular_weight>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="4932">Saccharomyces cerevisiae</recombinant_organism>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="5">
            <name>Tex1</name>
            <natural_source database="NCBI">
               <organism ncbi="4932">Saccharomyces cerevisiae</organism>
               <synonym_organism>Baker's Yeast</synonym_organism>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">50</experimental>
               <theoretical units="MDa">50</theoretical>
            </molecular_weight>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="4932">Saccharomyces cerevisiae</recombinant_organism>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.35</concentration>
               <buffer>
                  <ph>8.0</ph>
                  <details>10 mM Tris_HCl, 450 mM NaCl</details>
               </buffer>
               <staining>
                  <type>NEGATIVE</type>
                  <details>Samples were applied onto carbon-coated copper grids and stained with 2% uranyl acetate for 1 min</details>
               </staining>
               <grid>
                  <details>200 mesh carbon-coated copper grids, glow discharged</details>
               </grid>
               <vitrification>
                  <cryogen_name>NONE</cryogen_name>
                  <instrument>OTHER</instrument>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>JEOL 1200EXII</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>TUNGSTEN HAIRPIN</electron_source>
               <acceleration_voltage units="kV">100</acceleration_voltage>
               <nominal_cs units="mm">5.6</nominal_cs>
               <nominal_defocus_min units="&#181;m">1.0</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">3.0</nominal_defocus_max>
               <nominal_magnification>60000.0</nominal_magnification>
               <specimen_holder_model>JEOL</specimen_holder_model>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>Objective lens astigmatism was corrected at 100,000 times magnification</astigmatism>
                  </legacy>
               </alignment_procedure>
               <date>2009-06-15</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>ZEISS SCAI</scanner>
                     </digitization_details>
                     <number_real_images>250</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">10</average_electron_dose_per_image>
                     <bits_per_pixel>8.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <tilt_angle_min>0</tilt_angle_min>
               <tilt_angle_max>0</tilt_angle_max>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>Individual particles were manually selected using XMIPP software package.</details>
            <ctf_correction>
               <details>N. Grigorieffs CTFFIND</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">17.0</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>EMAN,Spider,XMIPP</name>
                  </software>
               </software_list>
               <number_images_used>14115</number_images_used>
            </final_reconstruction>
            <final_angle_assignment>
               <details>SPIDER protocol</details>
            </final_angle_assignment>
            <final_two_d_classification>
               <number_classes>15</number_classes>
            </final_two_d_classification>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="10720">
      <file>emd_2053.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>140</col>
         <row>140</row>
         <sec>140</sec>
      </dimensions>
      <origin>
         <col>-70</col>
         <row>-70</row>
         <sec>-70</sec>
      </origin>
      <spacing>
         <x>140</x>
         <y>140</y>
         <z>140</z>
      </spacing>
      <cell>
         <a units="&#8491;">326.19998</a>
         <b units="&#8491;">326.19998</b>
         <c units="&#8491;">326.19998</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.57409996</minimum>
         <maximum>12.31480503</maximum>
         <average>1.08922005</average>
         <std>0.72266853</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">2.33</x>
         <y units="&#8491;">2.33</y>
         <z units="&#8491;">2.33</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>2.52</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Reconstruction of yeast THO complex composed of Tho2, Hpr1, Mft1, Thp2, and Tex1 subunits</annotation_details>
      <details>::::EMDATABANK.org::::EMD-2053::::</details>
   </map>
</emd>