2020-11-25 REL RCSB RCSB RCSB 2019-07-22 2020-03-04 2020-03-25 2020-11-25 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) United States Subtomogram average of a purified Leptospira biflexa -fcpB mutant flagellum Brady MR Gibson KH Sindelar CV Gibson KH Trajtenberg F Wunder EA Brady MR San Martin F Mechaly A Shang Z Liu J Picardeau M Ko A Buschiazzo A Sindelar CV An asymmetric sheath controls flagellar supercoiling and motility in the leptospira spirochete. Elife US 9 2020 32157997 doi:10.7554/eLife.53672 2050-084X Wunder EA Slamti L Suwondo DN Gibson KH Shang Z Sindelar CV Trajtenberg F Buschiazzo A Ko AI Picardeau M FcpB Is a Surface Filament Protein of the Endoflagellum Required for the Motility of the Spirochete Front Cell Infect Microbiol CH 8 130 2018 29868490 doi:10.3389/fcimb.2018.00130 2235-2988 EMD-20503 associated EM volume Flagellum Flagellum 0
Purified periplasmic flagella from Leptospira biflexa serovar Patoc -fcpB mutant
Leptospira biflexa serovar Patoc Periplasmic space subtomogramAveraging filament 6.8 H2O C-flat-1.2/1.3 COPPER 200 CARBON CONTINUOUS 3.0 CARBON HOLEY GLOW DISCHARGE
The sample was glow-discharged with ArO2 for 6 seconds.
 ETHANE 100 291 FEI VITROBOT MARK III
Blot time of 6 seconds, blot offset -1mm.
Flagella were purified from Leptospira biflexa serovar Patoc according to the method described from Wunder et al. 2016 (Molecular Microbiology). After the final centrifugation, the flagella were resuspended in 0.5 mL H2O, and approximately 0.2% sodium azide was added as a preservative. Flagella were stored at 4 degrees C.
 FEI TECNAI F20 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 50.0 1.2 2.5 14500.0 GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 1 1.5 8.35 1 C1 BACK PROJECTION 18.4 FSC 0.143 CUT-OFF emClarity
emClarity was used to generate a final structure from the 10 best tomograms (that contained 14 filaments).
10 24 5917 RELION IMOD MAXIMUM LIKELIHOOD emd_20503.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 171 171 171 0 0 0 171 171 171 849.86993 849.86993 849.86993 90.0 90.0 90.0 X Y Z -12.255934 18.001131 -0.0000000001 0.99999994 4.97 4.97 4.97 4.01 AUTHOR Map of the Leptospira biflexa purified -fcpB flagellum, determined through subtomogram averaging with emClarity. emd_20503_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 171 171 171 0 0 0 171 171 171 849.86993 849.86993 849.86993 90.0 90.0 90.0 X Y Z -18.039953 18.251925 0.00000000003 0.99999994 4.97 4.97 4.97 AUTHOR Half mask of the Leptospira biflexa purified -fcpB flagellum, determined through subtomogram averaging with emClarity. emd_20503_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 171 171 171 0 0 0 171 171 171 849.86993 849.86993 849.86993 90.0 90.0 90.0 X Y Z -17.269262 17.786175 -0.000000000 0.99999994 4.97 4.97 4.97 AUTHOR Half mask of the Leptospira biflexa purified -fcpB flagellum, determined through subtomogram averaging with emClarity.