REL PDBe PDBe PDBe 2012-03-02 2012-03-22 2012-03-22 2013-07-03 Cryo-electron microscopy study of hepatitis B virus decorated with the antibody E1 Wu W Chen ZC Cheng NQ Watts NR Stahl SJ Farci P Purcell RH Wingfield PT Steven AC Hepatitis B, core antigen, ALF, acute liver failure, antibody E1, monoclonal, conformational epitope, fulminant hepatitis, cryo-EM Wu W Chen Z Cheng N Watts NR Stahl SJ Farci P Purcell RH Wingfield PT Steven AC Specificity of an anti-capsid antibody associated with Hepatitis B Virus-related acute liver failure. J.STRUCT.BIOL. 181 53 60 2013 23079477 doi:10.1016/j.jsb.2012.10.004 Antibody E1 to Hepatitis B core antigen Antibody E1 to Hepatitis B core antigen
The antibody E1 is derived from two ALF patients. T=4 hepatitis B particle is Cp149.3CA
One antibody to one face of the dimer 1 4.06 Hepatitis B virus Hepatitis B virus Homo sapiens VERTEBRATES VIRUS-LIKE PARTICLE SPECIES true true Antibody E1 Homo sapiens Human Plasma B-lyphocytes 0.05
Molecular weight is for one copy
true singleParticle particle ETHANE 38 100 OTHER Manual plunging FEI/PHILIPS CM200FEG FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 120 2.0 0.001 0.0018 5000.0 51689.0 GATAN LIQUID NITROGEN 100 Objective lens astigmatism was corrected at 175,000 magnification 2010-07-01 KODAK SO-163 FILM NIKON SUPER COOLSCAN 9000 6.35 52 20
There are two kinds of particle in each micrograph. T=4 and T=3 Hepatitis B particles.
16.
EMAN and EMAN2 were applied to solve the structure.
Micrograph
 I OTHER 10.0 FSC 0.5 CUT-OFF EMAN,EMAN2 3787
EMAN convention
 emd_2046.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 200 200 200 -100 -100 -100 200 200 200 491.4 491.4 491.4 90.0 90.0 90.0 X Y Z -1.45940518 6.02104616 -0.00000001 1.0 2.457 2.457 2.457 0.4 AUTHOR 3D reconstruction of antibody-decorated Hepatitis B T=4 particle
::::EMDATABANK.org::::EMD-2046::::
 1qgt A B C D RIGID BODY FIT Chimera,Situs
Protocol: Rigid body. The PDB structure was manually docked into the reconstruction using Chimera and was automatically fitted using Situs.
REAL