2026-08-12 REL RCSB INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update DATABASE_REFERENCES citation _citation.journal_volume _citation.page_first _citation.page_last DATABASE_REFERENCES chem_comp_atom chem_comp_bond database_2 _database_2.pdbx_DOI _database_2.pdbx_database_accession REMEDIATION REPOSITORY Metalloprotein remediation STRUCTURE_SUMMARY em_admin pdbx_entry_details pdbx_nonpoly_atom_coordination pdbx_nonpoly_atom_coordination_sphere pdbx_nonpoly_atom_coordination_sphere_order struct_conn _em_admin.last_update _pdbx_entry_details.has_protein_modification _struct_conn.pdbx_leaving_atom_flag RCSB RCSB 2019-07-08 2019-07-24 2019-11-20 2026-08-12 Cryo-EM structure of AdnAB-AMPPNP-DNA complex Jia N Unciuleac M Shuman S Patel DJ DNA, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA complex Jia N Unciuleac MC Xue C Greene EC Patel DJ Shuman S Structures and single-molecule analysis of bacterial motor nuclease AdnAB illuminate the mechanism of DNA double-strand break resection. Proc.Natl.Acad.Sci.USA US 116 24507 24516 2019 31740608 doi:10.1073/pnas.1913546116 1091-6490 0040 PNASA6 EMD-20446 other EM volume EMD-20440 other EM volume 6ppu FULLOVERLAP EMDB EMD-20446 other EM volume EMDB EMD-20440 other EM volume EMDB EMD-20447 associated EM volume
Cryo-EM structure of AdnAB-AMPPNP-DNA complex
 AdnAB-AMPPNP-DNA complex AdnAB-AMPPNP-DNA complex 0 1 2 3 0.2 UvrD/REP helicase 1 Mycolicibacterium smegmatis ATP-dependent DNA helicase (UvrD/REP) 1 Mycolicibacterium smegmatis DNA 1 Bacillus subtilis subsp. subtilis str. 168 UvrD/REP helicase Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) ATCC 700084 / mc(2)155 0.118128547 1 Escherichia coli LEVO MTQVASPVVQARYSPVELSAALGLFPPTDEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGFATPSQVLGLTFT RKAAGQLLRRVRTRLARLAGAGLAPGSGASDESATVSTYHAFAGTLLREHGLLLPVEPDTRLLSETELWQLAYDVVCAHP GHLDTEKTPAAVTAMVLRLSGALAEHLVDTDQLRDTHVELERLVHTLPAGPYQRDRGPSQWLLRMLATQTERTELVPLID ALHQRMRAEKVMDFGMQMAAAARLAARFPQVGEQLRQRFRVVLLDEYQDTGHAQRIALSSLFGGGADDGLALTAVGDPIQ SIYGWRGASATNLPRFTTDFPYSDGTPAPTLELRTSWRNPPSTLHVANAVSEEARRRSVAVRALRPRPDAEPGTIRCALL NNVAAERDWVADHLARAYHGAIGRGEAAPTAAVLVRRNADAAPMAEALTARGVPVEVVGVAGLLAVPEVADLVAMLRLIA DPTAGSAVMRILTGPRWRFGARDIAALWRRAVELDDRPKGELGTADIVAQAAPDADTACVADAICDPGDAERYSPAGYER IVALGRELTMLRAHLGHPLPELVAEVRRVLGLDAEARAARPVAAGWAGTENLDRFSDLVSDFAGHAGASVSALLAYLDAA VEVENGLAPAELTVSHDRVQILTVHAAKGLEWQVVAVPHLSARVFPSTTQARTWLTDASDLPPLLRGDRATESEIGVPVL DTSDIYDRKILSDKISDHKKSLDQRRVDEERRLLYVAITRAEDTLLLSGHHWGATESKPRGPSEFLCELKTILEEATAAG TPCGEIEHWAPDPAPGETNPLRDQVVEALWPPVASADDHVHRGAQLVAAAMAGEVSAEADQEGWAADVDALLAERERPPQ QEDTELPGQLSVSTLVELSRDPKAALTRLRRRLPQRPDPHALLGTTFHEWVQRYFHAERLFDLDDLPGAVDSDSGRAVEE SLAELQDAFVKSPWAARTPVEVEVPFDMVLGETVVRGRIDAVFAEPDGTTMVLDWKTGDPPETPEAKEHAAVQLAVYRLA WAAMRGCPPESVRAAFHYVRSGQTVIPETLPGAEELVKLLAAAPTETAEEADRIT I7FZ56 ATP-dependent DNA helicase (UvrD/REP) Mycobacterium smegmatis 0.07604931200000001 1 Escherichia coli LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)GTVTVRLAASTHAEGTMIADALRRAHLVDGIPWSQMAVIVRSVPRVGTAL ARALTAAGVPVQDNGTDVPVGRQPAAAALLTVLDVTATGHLDADSAVALLTGPIGRVDPVTLRQLRRALRRADGSQPPRD FGDLLVDAIEREPKGLSAEHARTLRRLRAVLTAARRSDASGADPRYTLWQAWHASGLQRRWLAASERGGSVGAQADRDLD AVTTLFDVADQYVNRTAGASLRGLVDHVTRLGAAVARTEPETAAEAVAVLSVHGALAGEWDFVVIAGVQEGLWPNMIPRG GVLGTQHLVDVLDGVADMTDRTVSTRAPLVAEERRLLMAAMGRARTRVMITAVDS(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)PPLVAPRVLAPSALVGRLRAVVCAPDGAVDDDARACAAAQ LARLAAAGVPGADPSQWHAMTSLTTEEPLWSEPGHVVTLSPSTLQMLTDCPLRWLLERHGGDDGRDVRSTVGSLVHALVS EPGKTESQLVNELEKVWDDLPYDAKWYSDNELARHRAMLETFTRWREDTRRQLTEVATEIPVEGIVVEPGENTPGVRVRG RLDRLERDEAGRLVVVDLKTGKSPVTKDDAQNHAQLAMYQLAVAAGLLDDGDEPGGGKLVYLGKAGAAGATEREQDPLTP DKRAEWLETVGEAAAATAGPRFVARVNNGCANCPVRSSCPAQANGDRP A0A0D6HKQ2 A0A0D6HKQ2 3.6.4.12 DNA (29-MER) Bacillus subtilis subsp. subtilis str. 168 0.021477703 1 (DT)(DT)(DT)(DT)(DT)(DT)(DT)(DC)(DT)(DA)(DA)(DT)(DG)(DC)(DG)(DA)(DG)(DC)(DA)(DC) (DT)(DG)(DC)(DT)(DA)(DT)(DT)(DC)(DC)(DC)(DT)(DA)(DG)(DC)(DA)(DG)(DT)(DG)(DC)(DT) (DC)(DG)(DC)(DA)(DT)(DT)(DA)(DG)(DA)(DT)(DT)(DT)(DT)(DG)(DT)(DT)(DT)(DT)(DT)(DT) (DT)(DA)(DG)(DC)(DG)(DG)(DT)(DT)(DT)(DT) DNA MAGNESIUM ION 2.4305e-05 1 MG IRON/SULFUR CLUSTER 0.00035163999999999996 1 SF4 singleParticle particle 1.5 7.5 Tris
20 mM Tris-HCl, pH 7.5, 150 mM NaCl
 ETHANE 100 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) 2.16 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 3.5 FSC 0.143 CUT-OFF RELION 2.1 60108 RANDOM ASSIGNMENT MAXIMUM LIKELIHOOD emd_20447.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 280 280 280 0 0 0 280 280 280 241.164 241.164 241.164 90.0 90.0 90.0 X Y Z -0.08700995 0.2261253 0.0001757072 0.0032835205 0.8613 0.8613 0.8613 0.02 AUTHOR AdnAB-AMPPNP-DNA complex