2024-03-20 REL RCSB RCSB RCSB 2019-06-30 2019-08-28 2019-08-28 2024-03-20 National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS) United States Cryo-EM structure of the zebrafish TRPM2 channel in the apo conformation, processed with C4 symmetry Yin Y Wu M warmth sensor, redox sensor, calcium-permeable ion channel, TRP channel, TRPM channel, ion channel, ADP-ribose, TRANSPORT PROTEIN Yin Y Wu M Hsu AL Borschel WF Borgnia MJ Lander GC Lee SY Visualizing structural transitions of ligand-dependent gating of the TRPM2 channel. Nat Commun UK 10 3740 3740 2019 31431622 doi:10.1038/s41467-019-11733-5 2041-1723 EMD-20368 other EM volume
Cryo-EM structure of the zebrafish TRPM2 channel in the apo conformation, processed with C2 symmetry (pseudo C4 symmetry)
 EMD-20369 other EM volume
Cryo-EM structure of the zebrafish TRPM2 channel in the presence of ADPR and Ca2+
 6pkv FULLOVERLAP Transient receptor potential cation channel subfamily M member 2 Transient receptor potential cation channel subfamily M member 2 0 1 Danio rerio Transient receptor potential cation channel subfamily M member 2 Danio rerio 0.16760862499999998 4 Homo sapiens LEVO MALGTSGVKIHPNGNSNQLGVQLENVKLTSLFKKLDKRCSLASWIKENIKKKECCFYVEDGREGICKCGYPKVQHCDEAI KPEDYMGEQWDKHRHVRETPTDAFGDISFGGLGQKTGKYVRVSSDTSCENLYQLMTEQWKLRSPNLLISVTGGAKNFYIK THLKDKFRRGLIKVAQTTGAWILTGGTHAGVMKHVGMAVRDYTLSSGSMEGQIVVIGVAPWGVIHNRSTLIHPEGRFPAY YSLDEQGQGRLSCLDINHTHFLLVDDGTQGHYGVEIELRARLEKLISKLSLGNRESGVTIPVVCVVLDGGPGTLNTIYNS MLNHTPCVVLEGSGRLADVIAHVASVPVSKVTMALINRLLKRFFMQEYKNFTELQIIEWTKKIQDILRMPHLLTVFRIDE DKNYDVDVAILQALLKASRSDEHAGRHCWERQLELAVAWNRVDIAESEIFTEESQWTSSDLHPAMFSALVGDKPEFVRLL LENGVCVREFLEREETLCELYSHLPSCFFLRKLAKRVQGGKMRRGQEPLPGSRKVCLSHVSEEVRHLLGSFTQPLYIASR YKPTKDDVRLKVPSKGALDLPCSGEEWSADTVWDPGRDLFLWAVVQNNRELAEIGWEQCRDCIAAALAASKILRKLAQES GEDDSEEATEMLELANHYEKQAIGVFSECHSWDAQRAQKLLIRISPSWGRSTCLWLALEAHDKSFIAHSGVQALLTQIWC GELSVDNPHWKVLLCMIFFPLIYTGFLTFRRDEDIQRQAERTEQQKLAMESVFAGQSDGKIKRHLRGFSQKSELKPLNCS SRLMSFLKSPQVKFYWNIASYFGFLWLFAVVLMIDFQTSPSWRELLLYVWLTSLVCEEIRQLYHDFDGSGFRRKAKMYIK DLWNILDVLSIVLFIAGLICRLQASDTVFYIGKVILCIDFIIFCLRLMAIFSISRTLGPKIIIVRRMMLDLFFFMFLLSI WVVAYGVAKQGILIENEERLNWIIRGAVYEPYITIFGNFPTNIDNTLFDISSCSVNASDPLKPKCPMLNADNTPVFPEWL TIMMLCVYLLFANILLLNLLIAIFNYTFQEVQDNTDTIWKFQRYELIKEYHSRPALPPPFILLSHLILFIRGVFLRDLPQ RHKNFRQELEQTEEEELLSWEAYMKDNYLASTRQDESQSVEHRIHDTAEKVGAMSELLEREQEMV(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)DEEAPHMFARQLQYPDSTVRRFPVPEEKVSWEVNFSPYQPPVYNQQDSSESDTSALDKHRNPGGR TGIRGKGALNTLGPNHILHPIFTRWRDAEHKVLEFLAVWEDAEKRWALLGGPAQPDEPLAQVLERILGKKLNEKTKTLLK AGEEVYKGYVDDSRNTDNAWVETSIITLHCDKNTPLMADLNHMVESSLSSHQPLQWREVSSDACRCSYQREALRQIAHHH NTYFSNSLEVLFQGPDYKDDDDKAHHHHHHHHHH singleParticle particle 3.6 8.0 UltrAuFoil GOLD 300 GLOW DISCHARGE
15 mA
 ETHANE 95 298.15 LEICA EM GP FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.75 2.5 22500.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K3 (6k x 4k) 1 3776 4.6 60.0 1 301199 EMD-7127
The EM map for the previously reported apo TRPM8 structure (EMD-7127) was low-pass filtered to 30 Angstrom and used as an initial model without a reference mask.
 C4 4.3 FSC 0.143 CUT-OFF RELION 3.0
No symmetry (C1) was imposed during reconstructions and classifications. C4 symmetry was imposed during the final 3D auto-refinement.
58005 PROJECTION MATCHING RELION 3.0 PROJECTION MATCHING RELION 3.0 emd_20367.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 -256 0 0 256 256 256 272.896 272.896 272.896 90.0 90.0 90.0 X Y Z -0.027883323 0.055690564 -0.000032200187 0.0030542659 1.066 1.066 1.066 0.01 AUTHOR zebrafish TRPM2 channel in the apo conformation, processed with C4 symmetry 6D73 A PDB experimental model RIGID BODY FIT REAL 150.0