<?xml version="1.0" encoding="UTF-8"?>
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    <admin>
        <current_status>
            <date>2020-08-26</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2019-06-26</deposition>
            <header_release>2019-07-10</header_release>
            <map_release>2020-07-01</map_release>
            <update>2020-08-26</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>National Institutes of Health/National Cancer Institute (NIH/NCI)</funding_body>
                <code>CA187561</code>
                <country>United States</country>
            </grant_reference>
            <grant_reference>
                <funding_body>National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)</funding_body>
                <code>GM58015</code>
                <country>United States</country>
            </grant_reference>
            <grant_reference>
                <funding_body>National Institutes of Health/National Cancer Institute (NIH/NCI)</funding_body>
                <code>CA92267</code>
                <country>United States</country>
            </grant_reference>
        </grant_support>
        <title>EM structure of human tumor suppressor BRCA2 protein bound to human DSS1 protein and ssDNA without crosslinking</title>
        <authors_list>
            <author>Le HP</author>
            <author>Ma X</author>
            <author>Vaquero J</author>
            <author>Brinkmeyer M</author>
            <author>Guo F</author>
            <author>Heyer W-D</author>
            <author>Liu J</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Le HP</author>
                    <author order="2">Ma X</author>
                    <author order="3">Vaquero J</author>
                    <author order="4">Brinkmeyer M</author>
                    <author order="5">Guo F</author>
                    <author order="6">Heyer WD</author>
                    <author order="7">Liu J</author>
                    <title>DSS1 and ssDNA regulate oligomerization of BRCA2.</title>
                    <journal_abbreviation>Nucleic Acids Res.</journal_abbreviation>
                    <country>UK</country>
                    <volume>48</volume>
                    <first_page>7818</first_page>
                    <last_page>7833</last_page>
                    <year>2020</year>
                    <external_references type="PUBMED">32609828</external_references>
                    <external_references type="DOI">doi:10.1093/nar/gkaa555</external_references>
                    <external_references type="ISSN">1362-4962</external_references>
                    <external_references type="CSD">0389</external_references>
                    <external_references type="ASTM">NARHAD</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-20348</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-21998</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>BRCA2-DSS1-ssDNA</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>BRCA2-DSS1-ssDNA</name>
                <parent>0</parent>
                <details>Full-length human tumor suppressor BRCA2 protein in complex with DSS1 and dT100 oligo without crosslinking</details>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                    <recombinant_cell>HEK293</recombinant_cell>
                </recombinant_expression>
                <molecular_weight>
                    <experimental units="kDa/nm">474</experimental>
                </molecular_weight>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>7.5</ph>
                    </buffer>
                    <staining>
                        <type>NEGATIVE</type>
                        <material>2% uranyl acetate</material>
                        <details>BRCA2 complex was applied to glow-discharged continuous carbon copper grids and incubated for 2 min. Grids were washed briefly with 5 mM Mg(Acet)2 for three times to remove buffer, sucrose, and glycerol. Samples were then stained with 2% uranyl acetate, blotted with filter paper, and air dried.</details>
                    </staining>
                    <grid>
                        <model>Homemade</model>
                        <material>COPPER</material>
                        <mesh>300</mesh>
                        <support_film film_type_id="1">
                            <film_material>CARBON</film_material>
                            <film_topology>CONTINUOUS</film_topology>
                        </support_film>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                        </pretreatment>
                    </grid>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>JEOL 2100F</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <c2_aperture_diameter units="µm">100.0</c2_aperture_diameter>
                    <nominal_cs units="mm">2.0</nominal_cs>
                    <nominal_defocus_min units="µm">1.0</nominal_defocus_min>
                    <nominal_defocus_max units="µm">3.5</nominal_defocus_max>
                    <nominal_magnification>40000.0</nominal_magnification>
                    <specimen_holder_model>JEOL</specimen_holder_model>
                    <alignment_procedure>
                        <basic/>
                    </alignment_procedure>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>TVIPS TEMCAM-F415 (4k x 4k)</film_or_detector_model>
                            <digitization_details>
                                <dimensions>
                                    <width units="pixel">4096</width>
                                    <height units="pixel">4096</height>
                                </dimensions>
                                <sampling_interval units="µm">2.0</sampling_interval>
                            </digitization_details>
                            <number_grids_imaged>1</number_grids_imaged>
                            <number_real_images>686</number_real_images>
                            <average_exposure_time units="s">1.0</average_exposure_time>
                            <average_electron_dose_per_image units="e/Å^2">25.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <particle_selection>
                    <number_selected>35985</number_selected>
                </particle_selection>
                <final_reconstruction>
                    <number_classes_used>50</number_classes_used>
                    <applied_symmetry>
                        <point_group>C1</point_group>
                    </applied_symmetry>
                    <resolution units="Å" res_type="BY AUTHOR">17.1</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>SPHIRE</name>
                            <version>1.2</version>
                        </software>
                    </software_list>
                    <number_images_used>4786</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>ANGULAR RECONSTITUTION</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>1.3</version>
                        </software>
                    </software_list>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                    <software_list>
                        <software>
                            <name>SPHIRE</name>
                            <version>1.2</version>
                        </software>
                    </software_list>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="8389">
        <file>emd_20348.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>128</col>
            <row>128</row>
            <sec>128</sec>
        </dimensions>
        <origin>
            <col>-64</col>
            <row>-64</row>
            <sec>-64</sec>
        </origin>
        <spacing>
            <x>128</x>
            <y>128</y>
            <z>128</z>
        </spacing>
        <cell>
            <a units="Å">256.0</a>
            <b units="Å">256.0</b>
            <c units="Å">256.0</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.0073740995</minimum>
            <maximum>0.12452768</maximum>
            <average>0.0023194957</average>
            <std>0.010337854</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">2.0</x>
            <y units="Å">2.0</y>
            <z units="Å">2.0</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.0422</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-20348::::</label>
        <annotation_details>BRCA2-DSS1-ssDNA complex</annotation_details>
    </map>
</emd>
