2024-03-20 REL RCSB RCSB RCSB 2019-06-18 2019-07-03 2019-10-23 2024-03-20 National Institutes of Health/National Cancer Institute (NIH/NCI) CA221289 United States National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI) HL122416 United States National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI) HL071818 United States Single Particle Reconstruction of Phosphatidylinositol (3,4,5) trisphosphate-dependent Rac exchanger 1 bound to G protein beta gamma subunits Cash JN Cianfrocco MA RhoGEF, G protein, Complex, Phosphatase fold, SIGNALING PROTEIN Cash JN Urata S Li S Ravala SK Avramova LV Shost MD Gutkind JS Tesmer JJG Cianfrocco MA Cryo-electron microscopy structure and analysis of the P-Rex1-G beta gamma signaling scaffold. Sci Adv US 5 eaax8855 eaax8855 2019 31663027 doi:10.1126/sciadv.aax8855 2375-2548 6pcv FULLOVERLAP P-Rex1 bound to G protein beta gamma subunits P-Rex1 bound to G protein beta gamma subunits 0 1 2 3 Homo sapiens 0.009 Phosphatidylinositol (3,4,5) trisphosphate-dependent Rac exchanger 1 1 1 G protein beta-1 subunit 1 2 G protein gamma-2 subunit 1 3 Phosphatidylinositol (3,4,5) trisphosphate-dependent Rac exchanger 1 Homo sapiens 0.184840891 1 Homo sapiens LEVO GEFAAARESERQLRLRLCVLNEILGTERDYVGTLRFLQSAFLHRIRQNVADSVEKGLTEENVKVLFSNIEDILEVHKDFL AALEYCLHPEPQSQHELGNVFLKFKDKFCVYEEYCSNHEKALRLLVELNKIPTVRAFLLSCMLLGGRKTTDIPLEGYLLS PIQRICKYPLLLKELAKRTPGKHPDHPAVQSALQAMKTVCSNINETKRQMEKLEALEQLQSHIEGWEGSNLTDICTQLLL QGTLLKISAGNIQERAFFLFDNLLVYCKRKSRVTGSKKSTKRTKSINGSLYIFRGRINTEVMEVENVEDGTADYHSNGYT VTNGWKIHNTAKNKWFVCMAKTAEEKQKWLDAIIREREQRESLKLGMERDAYVMIAEKGEKLYHMMMNKKVNLIKDRRRK LSTVPKCFLGNEFVAWLLEIGEISKTEEGVNLGQALLENGIIHHVSDKHQFKNEQVMYRFRYDDGTYKARSELEDIMSKG VRLYCRLHSLYTPVIKDRDYHLKTYKSVLPGSKLVDWLLAQGDCQTREEAVALGVGLCNNGFMHHVLEKSEFRDESQYFR FHADEEMEGTSSKNKQLRNDFKLVENILAKRLLILPQEEDYGFDIEEKNKAVVVKSVQRGSLAEVAGLQVGRKIYSINED LVFLRPFSEVESILNQSFCSRRPLRLLVATKAKEIIKIPDQPDTLCFQIRGAAPPYVYAVGRGSEAMAAGLCAGQCILKV NGSNVMNDGAPEVLEHFQAFRSRREEALGLYQWIYHTHEDAQEARASQEASTEDPSGEQAQEEDQADSAFPLLSLGPRLS LCEDSPMVTLTVDNVHLEHGVVYEYVSTAGVRCHVLEKIVEPRGCFGLTAKILEAFAANDSVFVENCRRLMALSSAIVTM PHFEFRNICDTKLESIGQRIACYQEFAAQLKSRVSPPFKQAPLEPHPLCGLDFCPTNCHINLMEVSYPKTTPSVGRSFSI RFGRKPSLIGLDPEQGHLNPMSYTQHCITTMAAPSWKCLPAAEGDPQGQGLHDGSFGPASGTLGQEDRGLSFLLKQEDRE IQDAYLQLFTKLDVALKEMKQYVTQINRLLSTITEPTSGGSCDASLAEEASSLPLVSEESEMDRSDHGGIKKVCFKVAEE DQEDSGHDTMSYRDSYSECNSNRDSVLSYTSVRSNSSYLGSDEMGSGDELPCDMRIPSDKQDKLHGCLEHLFNQVDSINA LLKGPVMSRAFEETKHFPMNHSLQEFKQKEECTIRGRSLIQISIQEDPWNLPNSIKTLVDNIQRYVEDGKNQLLLALLKC TDTELQLRRDAIFCQALVAAVCTFSEQLLAALGYRYNNNGEYEESSRDASRKWLEQVAATGVLLHCQSLLSPATVKEERT MLEDIWVTLSELDNVTFSFKQLDENYVANTNVFYHIEGSRQALKVIFYLDSYHFSKLPSRLEGGASLRLHTALFTKVLEN VEGLPSPGSQAAEDLQQDINAQSLEKVQQYYRKLRAFYLERSNLPTDASTTAVKIDQLIRPINALDELCRLMKSFVHPKP GAAGSVGAGLIPISSELCYRLGACQMVMCGTGMQRSTLSVSLEQAAILARSHGLLPKCIMQATDIMRKQGPRVEILAKNL RVKDQMPQGAPRLYRLCQPPVDGDLHHHHHHHHHH A0A2X0SFH1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 Bos taurus 0.03741693 1 Trichoplusia ni LEVO MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLI IWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV TDDGMAVATGSWDSFLKIWN P62871 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 Bos taurus 0.009226547 1 Trichoplusia ni LEVO HHHHHHHHHHMASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPFREKKFFSAI L P63212 singleParticle particle 0.7 8.0 Quantifoil, UltrAuFoil, R1.2/1.3 GOLD 300 GLOW DISCHARGE ETHANE 100 277 FEI VITROBOT MARK IV FEI TITAN KRIOS OTHER BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 29000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 3838 3710 2 6746 47.0 1 905464
600,588 particles (untilted) and 304,876 particles (30 degree tilted)
cryoSPARC ab initio model calculation was used to create initial model
 C1 3.2 FSC 0.143 CUT-OFF cryoSPARC v0.65 205599 MAXIMUM LIKELIHOOD cryoSPARC v0.65 MAXIMUM LIKELIHOOD cryoSPARC v0.65 emd_20308.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 300.0 300.0 300.0 90.0 90.0 90.0 X Y Z -0.23757373 0.9838253 0.0003407711 0.008663468 1.0 1.0 1.0 0.0361 AUTHOR 3V5W B PDB experimental model 3V5W G PDB experimental model 3QIK A 622-706 PDB experimental model AB INITIO MODEL REAL 83.0 emd_20308_msk_1.map emd_20308_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 300.0 300.0 300.0 90.0 90.0 90.0 X Y Z -0.1916431 0.5472123 0.000219602 0.014540486 1.0 1.0 1.0 AUTHOR Unsharpened map emd_20308_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 300.0 300.0 300.0 90.0 90.0 90.0 X Y Z -0.6535043 0.66535795 0.0004211596 0.074446864 1.0 1.0 1.0 AUTHOR Sharpened map emd_20308_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 300.0 300.0 300.0 90.0 90.0 90.0 X Y Z -0.6535043 0.66535795 0.0004211596 0.074446864 1.0 1.0 1.0 AUTHOR emd_20308_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 300.0 300.0 300.0 90.0 90.0 90.0 X Y Z -0.6535043 0.66535795 0.0004211596 0.074446864 1.0 1.0 1.0 AUTHOR