2023-08-16 REL RCSB RCSB RCSB 2019-06-06 2019-07-17 2019-08-21 2023-08-16 Howard Hughes Medical Institute (HHMI) United States Cryo-EM structure of LbCas12a-crRNA: AcrVA4 (2:2 complex) Knott GJ Liu JJ CRISPR-Cas, anti-CRISPR, Cas12a, Cpf1, LbCas12a, AcrVA4, RNA BINDING PROTEIN-RNA complex Knott GJ Cress BF Liu JJ Thornton BW Lew RJ Al-Shayeb B Rosenberg DJ Hammel M Adler BA Lobba MJ Xu M Arkin AP Fellmann C Doudna JA Structural basis for AcrVA4 inhibition of specific CRISPR-Cas12a. Elife US 8 2019 31397669 doi:10.7554/eLife.49110 2050-084X Adams PD Afonine PV Bunkoczi G Chen VB Davis IW Echols N Headd JJ Hung LW Kapral GJ Grosse-Kunstleve RW McCoy AJ Moriarty NW Oeffner R Read RJ Richardson DC Richardson JS Terwilliger TC Zwart PH PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr.,Sect.D US 66 213 221 2010 20124702 doi:10.1107/S0907444909052925 1399-0047 ABCRE6 EMD-20266 other EM volume
Cryo-EM structure of LbCas12a-crRNA: AcrVA4 (1:2 complex)
 6p7n FULLOVERLAP LbCas12a-crRNA-AcrVA4 Complex (2:2, State I) LbCas12a-crRNA-AcrVA4 Complex (2:2, State I) 0 1 2 3
Homodimeric AcrVA4 bound to two copies of the LbCas12a-crRNA complex.
 LbCas12a 1 2 Lachnospiraceae bacterium ND2006 crRNA 1 3 Lachnospiraceae bacterium ND2006 AcrVA4 1 1 Moraxella bovoculi anti-CRISPR VA4 Moraxella bovoculi 0.027641422 2 Escherichia coli LEVO SNAMYEIKLNDTLIHQTDDRVNAFVAYRYLLRRGDLPKCENIARMYYDGKVIKTDVIDHDSVHSDEQAKVSNNDIIKMAI SELGVNNFKSLIKKQGYPFSNGHINSWFTDDPVKSKTMHNDEMYLVVQALIRACIIKEIDLYTEQLYNIIKSLPYDKRPN VVYSDQPLDPNNLDLSEPELWAEQVGECMRYAHNDQPCFYIGSTKRELRVNYIVPVIGVRDEIERVMTLEEVRNLHK A0A0U2APF4 Cas12a Lachnospiraceae bacterium ND2006 0.144160609 2 Escherichia coli LEVO SNAMSKLEKFTNCYSLSKTLRFKAIPVGKTQENIDNKRLLVEDEKRAEDYKGVKKLLDRYYLSFINDVLHSIKLKNLNNY ISLFRKKTRTEKENKELENLEINLRKEIAKAFKGNEGYKSLFKKDIIETILPEFLDDKDEIALVNSFNGFTTAFTGFFDN RENMFSEEAKSTSIAFRCINENLTRYISNMDIFEKVDAIFDKHEVQEIKEKILNSDYDVEDFFEGEFFNFVLTQEGIDVY NAIIGGFVTESGEKIKGLNEYINLYNQKTKQKLPKFKPLYKQVLSDRESLSFYGEGYTSDEEVLEVFRNTLNKNSEIFSS IKKLEKLFKNFDEYSSAGIFVKNGPAISTISKDIFGEWNVIRDKWNAEYDDIHLKKKAVVTEKYEDDRRKSFKKIGSFSL EQLQEYADADLSVVEKLKEIIIQKVDEIYKVYGSSEKLFDADFVLEKSLKKNDAVVAIMKDLLDSVKSFENYIKAFFGEG KETNRDESFYGDFVLAYDILLKVDHIYDAIRNYVTQKPYSKDKFKLYFQNPQFMGGWDKDKETDYRATILRYGSKYYLAI MDKKYAKCLQKIDKDDVNGNYEKINYKLLPGPNKMLPKVFFSKKWMAYYNPSEDIQKIYKNGTFKKGDMFNLNDCHKLID FFKDSISRYPKWSNAYDFNFSETEKYKDIAGFYREVEEQGYKVSFESASKKEVDKLVEEGKLYMFQIYNKDFSDKSHGTP NLHTMYFKLLFDENNHGQIRLSGGAELFMRRASLKKEELVVHPANSPIANKNPDNPKKTTTLSYDVYKDKRFSEDQYELH IPIAINKCPKNIFKINTEVRVLLKHDDNPYVIGIDRGERNLLYIVVVDGKGNIVEQYSLNEIINNFNGIRIKTDYHSLLD KKEKERFEARQNWTSIENIKELKAGYISQVVHKICELVEKYDAVIALEDLNSGFKNSRVKVEKQVYQKFEKMLIDKLNYM VDKKSNPCATGGALKGYQITNKFESFKSMSTQNGFIFYIPAWLTSKIDPSTGFVNLLKTKYTSIADSKKFISSFDRIMYV PEEDLFEFALDYKNFSRTDADYIKKWKLYSYGNRIRIFRNPKKNNVFDWEEVCLTSAYKELFNKYGINYQQGDIRALLCE QSDKAFYSSFMALMSLMLQMRNSITGRTDVDFLISPVKNSDGIFYDSRNYEAQENAILPKNADANGAYNIARKVLWAIGQ FKKAEDEKLDKVKIAISNKEWLEYAQTSVKH mature crRNA Lachnospiraceae bacterium ND2006 0.012815634 2 AAUUUCUACUAAGUGUAGAUAAAGUGCUCAUCAUUGGAAA MAGNESIUM ION 2.4305e-05 4 MG singleParticle particle 7.5 20.0 C8H18N2O4S HEPES 200.0 KCl potassium chloride 1.0 C9H15O6P tris((2-carboxyethyl)phosphine) 0.1 C3H8O3 glycerol
unspecified
 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 42.0 1 5ID6 1 C1 4.9 FSC 0.143 CUT-OFF 79787 NOT APPLICABLE NOT APPLICABLE emd_20267.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 340 340 340 0 0 0 340 340 340 306.0 306.0 306.0 90.0 90.0 90.0 X Y Z -0.24226066 0.6646911 0.0021240285 0.03206585 0.9 0.9 0.9 0.08 EMDB 3D Reconstruction (State II) emd_20267_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 340 340 340 0 0 0 340 340 340 306.0 306.0 306.0 90.0 90.0 90.0 X Y Z -1.5239271 1.5669408 0.001867974 0.19434965 0.9 0.9 0.9 EMDB 3D Reconstruction (State II) Half Map A emd_20267_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 340 340 340 0 0 0 340 340 340 306.0 306.0 306.0 90.0 90.0 90.0 X Y Z -1.5139947 1.6187271 0.0018403344 0.19412945 0.9 0.9 0.9 EMDB 3D Reconstruction (State II) Half Map B