Symmetric reconstruction of human norovirus GII.4 Minerva strain VLP in T=4 symmetry

2024-03-20 REL RCSB RCSB RCSB 2019-05-05 2019-05-29 2019-06-26 2024-03-20 Howard Hughes Medical Institute (HHMI) United States Symmetric reconstruction of human norovirus GII.4 Minerva strain VLP in T=4 symmetry Jung J Grant T Caliciviridae, Calicivirus, Norovirus, GII.4, VIRUS LIKE PARTICLE Jung J Grant T Thomas DR Diehnelt CW Grigorieff N Joshua-Tor L High-resolution cryo-EM structures of outbreak strain human norovirus shells reveal size variations. Proc.Natl.Acad.Sci.USA US 116 12828 12832 2019 31182604 doi:10.1073/pnas.1903562116 1091-6490 0040 PNASA6 EMD-20195 other EM volume EMD-20197 other EM volume EMD-20198 other EM volume EMD-20199 other EM volume EMD-20205 other EM volume EMD-20201 other EM volume EMD-20202 other EM volume 6ouu FULLOVERLAP Norovirus Hu/GII.4/Minerva/2006/USA Norovirus Hu/GII.4/Minerva/2006/USA 0 1 Norovirus Hu/GII.4/Minerva/2006/USA GII.4 Homo sapiens 14.16 VP1 490.0 4 VIRUS-LIKE PARTICLE STRAIN false true Major capsid protein Norovirus Hu/GII.4/Minerva/2006/USA 0.058938097999999994 4 Nicotiana LEVO MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQQNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAP LGPDLNPYLSHLARMYNGYAGGFEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPPTVESRTKPFTVPILTVEEMTNS RFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTTQLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAP LGTPDFVGKIQGVLTQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDGSTTHRNEP QQWVLPSYSGRNVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLDCLLPQEWVQHFYQEAAPAQSDVALLRFVNP DTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPMGNGTGGRRAL R4I3T2 singleParticle particle 4 5.75 COPPER CARBON LACEY GLOW DISCHARGE

unspecified

ETHANE 95 295 LEICA EM GP FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 1.0 2.6 130000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Quantum LS GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 2951 7.0 69.0 1 94501

ab inito

I FOURIER SPACE 4.1 FSC 0.143 CUT-OFF cisTEM 1.0.0 17847 COMMON LINE cisTEM 1.0.0 MAXIMUM LIKELIHOOD cisTEM 1.0.0 emd_20206.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 800 800 800 0 0 0 800 800 800 856.00006 856.00006 856.00006 90.0 90.0 90.0 X Y Z -0.5386191 0.8902737 0.0015412356 0.036779247 1.07 1.07 1.07 0.18 AUTHOR ::::EMDATABANK.org::::EMD-20206:::: Symmetric reconstruction of human norovirus GII.4 Minerva strain VLP in T=4 symmetry 5IYN A 225-529 PDB experimental model AB INITIO MODEL REAL