2024-11-06 REL RCSB RCSB RCSB 2019-05-02 2019-05-29 2019-07-24 2024-11-06 Cryo-EM structure of vaccine-elicited antibody 0PV-a.01 in complex with HIV-1 Env BG505 DS-SOSIP and antibodies VRC03 and PGT122 Gorman J Kwong PD Fusion Peptide, FP, HIV-1, SOSIP, Vaccine, IMMUNE SYSTEM Kong R Duan H Sheng Z Xu K Acharya P Chen X Cheng C Dingens AS Gorman J Sastry M Shen CH Zhang B Zhou T Chuang GY Chao CW Gu Y Jafari AJ Louder MK O'Dell S Rowshan AP Viox EG Wang Y Choi CW Corcoran MM Corrigan AR Dandey VP Eng ET Geng H Foulds KE Guo Y Kwon YD Lin B Liu K Mason RD Nason MC Ohr TY Ou L Rawi R Sarfo EK Schon A Todd JP Wang S Wei H Wu W Mullikin JC Bailer RT Doria-Rose NA Karlsson Hedestam GB Scorpio DG Overbaugh J Bloom JD Carragher B Potter CS Shapiro L Kwong PD Mascola JR Antibody Lineages with Vaccine-Induced Antigen-Binding Hotspots Develop Broad HIV Neutralization. Cell 178 567 584.e19 2019 31348886 doi:10.1016/j.cell.2019.06.030 1097-4172 6osy FULLOVERLAP HIV-1 Env BG505 DS-SOSIP and antibodies 0PV-a.01, VRC03 and PGT122 HIV-1 Env BG505 DS-SOSIP and antibodies 0PV-a.01, VRC03 and PGT122 0 1 2 3 4 5 6 7 8 Envelope glycoprotein gp120 1 1 Human immunodeficiency virus 1 Envelope glycoprotein gp41 1 6 Human immunodeficiency virus 1 VRC03 1 4 5 Homo sapiens PGT122 1 2 3 Homo sapiens 0PV-a.01 1 7 8 Homo sapiens BG505 gp120 Human immunodeficiency virus 1 0.053987194999999995 3 Homo sapiens LEVO AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIIS LWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKE YRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEV MIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRK HFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQ CMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVGRRRRRR Q2N0S6 PGT122 Heavy Homo sapiens 0.025434691 3 Homo sapiens LEVO QVHLQESGPGLVKPSETLSLTCNVSGTLVRDNYWSWIRQPLGKQPEWIGYVHDSGDTNYNPSLKSRVHLSLDKSKNLVSL RLTGVTAADSAIYYCATTKHGRRIYGVVAFKEWFTYFYMDVWGKGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCL VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC PGT122 Light Homo sapiens 0.022880275000000002 3 Homo sapiens LEVO APTFVSVAPGQTARITCGEESLGSRSVIWYQQRPGQAPSLIIYNNNDRPSGIPDRFSGSPGSTFGTTATLTITSVEAGDE ADYYCHIWDSRRPTNWVFGEGTTLIVLSQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGV ETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTECS VRC03 Light Homo sapiens 0.023146794999999998 3 Homo sapiens LEVO EIVLTQSPGILSLSPGETATLFCKASQGGNAMTWYQKRRGQVPRLLIYDTSRRASGVPDRFVGSGSGTDFFLTINKLDRE DFAVYYCQQFEFFGLGSELEVHRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTE QDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC VRC03 Heavy Homo sapiens 0.025248436 3 Homo sapiens LEVO QVQLVQSGAVIKTPGSSVKISCRASGYNFRDYSIHWVRLIPDKGFEWIGWIKPLWGAVSYARQLQGRVSMTRQLSQDPDD PDWGVAYMEFSGLTPADTAEYFCVRRGSCDYCGDFPWQYWGQGTVVVVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVK DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC BG505 gp41 Human immunodeficiency virus 1 0.017146481999999998 3 Homo sapiens LEVO AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQ LLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD 0PV-a.01 Heavy Homo sapiens 0.025411491999999997 3 Homo sapiens LEVO EVQLVESGPGVMKPSETLSLICAVSGDTISSPYYFWSWVRQPRGKGLEWIGGLYSNTMDVYYNPSLQSRVTISRDTSKNH FSLKVTSVTDTDTAVYYCARERVVAHNYYGLDLWGQGVAVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEP VTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQ 0PV-a.01 Light Homo sapiens 0.023409824 3 Homo sapiens LEVO DIQMTQSPSSLSASVGDRVTITCRASQDIKNSLSWYQQKLGKAPRRLMHHSSTLETGVPSRFSGSGYGTEFTLSINSLQP EDIAAYYCQQYEDFPLTFGGGTQVEIKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGVLKTGNSQ ESVTEQDSKDNTYSLSSTLTLSNTDYQSHNVYACEVTHQGLSSPVTKSFNRGE 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 9 NAG singleParticle particle 1.0 7.4 PBS Homemade CARBON LACEY ETHANE 90 293 SPOTITON FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 GATAN K2 SUMMIT (4k x 4k) COUNTING 1 2336 10.0 70.49 1 C3 4.3 FSC 0.143 CUT-OFF cryoSPARC 2 55345 NOT APPLICABLE NOT APPLICABLE cryoSPARC 2 emd_20189.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 352 352 352 0 0 0 352 352 352 377.78403 377.78403 377.78403 90.0 90.0 90.0 X Y Z -1.8779839 3.2302003 0.006238999 0.13807482 1.07325 1.07325 1.07325 0.45 AUTHOR Sharpened map 6CDI PDB experimental model FLEXIBLE FIT REAL emd_20189_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 352 352 352 0 0 0 352 352 352 377.78403 377.78403 377.78403 90.0 90.0 90.0 X Y Z -0.13552232 1.2129732 0.005234155 0.07294901 1.07325 1.07325 1.07325 AUTHOR Unsharpened map emd_20189_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 352 352 352 0 0 0 352 352 352 377.78403 377.78403 377.78403 90.0 90.0 90.0 X Y Z -0.76952547 1.3742533 0.006238079 0.114129 1.07325 1.07325 1.07325 AUTHOR Half map B emd_20189_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 352 352 352 0 0 0 352 352 352 377.78403 377.78403 377.78403 90.0 90.0 90.0 X Y Z -0.72994 1.3711406 0.0062399185 0.11432349 1.07325 1.07325 1.07325 AUTHOR Half map A