REL PDBe PDBe PDBe 2011-12-23 2012-01-13 2012-01-13 2015-06-10 CryoEM map of the p97-Ufd1-Npl4 complex in the two-binding-sites conformation Bebeacua C Forster A McKeown C Meyer HH Zhang X Freemont PS p97, Ufd1-Npl4, asymmetric complex, ATPase Bebeacua C Forster A McKeown C Meyer HH Zhang X Freemont PS Distinct conformations of the protein complex p97-Ufd1-Npl4 revealed by electron cryomicroscopy. PROC.NAT.ACAD.SCI.USA 109 1098 1103 2012 22232657 doi:10.1073/pnas.1114341109 p97-Ufd1-Npl4 p97-Ufd1-Npl4 One hexamer of p97 binds to one Ufd1-Npl4 dimer 3 0.623 0.623 p97 Mus musculus House mouse Cytoplasm
This corresponds to the p97-Ufd1-Npl4 complex
1 true Escherichia coli BL21(DE3) Rosetta Ufd1 Mus musculus House mouse Cytoplasm
This corresponds to the p97-Ufd1-Npl4 complex
1 true Escherichia coli BL21(DE3) Rosetta Npl4 Rattus norvegicus Norway rat Cytoplasm
This corresponds to the p97-Ufd1-Npl4 complex
1 true Escherichia coli BL21(DE3) Rosetta singleParticle particle 0.5 8.0
150 mM KCL, 25 mL Tris, 2.5 mM MgCl2
200 mesh copper grid
 ETHANE 100 OTHER
Vitrification instrument: Vitrobot
Blot for 2 seconds before plunging FEI/PHILIPS CM200FEG OTHER BRIGHT FIELD FIELD EMISSION GUN 200 2.2 1.5 3.0 50000.0 50000.0 GATAN LIQUID NITROGEN Objective lens astigmatism was corrected at 100,000 times magnification FEI 2009-07-01 GENERIC CCD 100 10 Eucentric C1 OTHER 25.0 OTHER IMAGIC 5000 emd_2015.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 -64 -64 -64 128 128 128 451.84 451.84 451.84 90 90 90 X Y Z -1.92153 16.6492 0.0840537 0.725828 3.53 3.53 3.53 0.3 AUTHOR p97-Ufd1-Npl4 complex in the two-binding-sites conformation
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 1R7R RIGID BODY FIT Chimera
Protocol: Rigid Body. The protomers were fitted individually and the N-domains fitted by manual docking and refined automatically
Cross Correlation REAL