2024-03-20 REL RCSB RCSB RCSB 2019-04-11 2019-06-12 2019-06-12 2024-03-20 National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI) P41GM103832 United States National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI) R01GM079429 United States Singapore Grouper Iridovirus (SGIV) at 8.6 Angstrom Resolution Pintilie G Chen D-H icosahedral, trimers, outer coat, anchor proteins, zip proteins, VIRAL PROTEIN Pintilie G Chen DH Tran BN Jakana J Wu J Hew CL Chiu W Segmentation and Comparative Modeling in an 8.6- angstrom Cryo-EM Map of the Singapore Grouper Iridovirus. Structure UK 27 1561 2019 31447288 doi:10.1016/j.str.2019.08.002 0969-2126 2005 STRUE6 6ojn FULLOVERLAP Singapore grouper iridovirus Singapore grouper iridovirus 0 1 Singapore grouper iridovirus Epinephelus tauvina Outer coat 2200.0 247 VIRION SPECIES true false Major capsid protein Singapore grouper iridovirus 0.050573141 3 LEVO MTCTTGAGVTSGFIDLATYDNLDRALYGGKDATTYFIKEHYPVGWFTKLPTMATRVSGNPAFGQEFSVGVPRSGDYVLNA WLTLKTPEIKLLETNRLGANGTVRWTKNLMHNAVEHASLTFNDICAQQFNTAYLDAWTQFNMCEGKRIGYDNMIGNTSDM TNPTPAQGQDGARTLPSKNLVLPLPFFFSRDCGLALPTVVLPYNEIRINIKLRSLQELLVFQNKDTGNVIPISATDIAGG LADTVEAYVYMTVGLVSNVERCAMAGTVRDMVVEQMQAAPTHIVNPQNTNNVHVDMRFSHAVKALFFMVQNVTYKSVGSN YTCVTPVNGPGNTVMEPAMSVDPIKSASLTYENTTRLANMGVEYYSLVQPWYFSASIPVYTGYHMYSYALNVGSVHPSGS TNYGRLTNASITVTMSPESVVAAAGGGNNNSGYNEPQRFALVVIAVNHNVIRIMNGSMGFPIL Q5YFJ3 singleParticle particle 7.4 Quantifoil R2/1 ETHANE 100 FEI VITROBOT MARK IV
Blotted for 1 second before plunging..
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 1.5 3.0 63290.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN ULTRASCAN 4000 (4k x 4k) 1.0 25.0 1 19628
EMAN1 starticos was used.
 I FOURIER SPACE 8.6 FSC 0.143 CUT-OFF EMAN 9422 COMMON LINE MPSA COMMON LINE MPSA 1 emd_20091.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 1200 1200 1200 -600 -600 -600 1200 1200 1200 2843.9998 2843.9998 2843.9998 90.0 90.0 90.0 X Y Z -13.887831 21.549627000000001 -0.04749717 1.4707036 2.37 2.37 2.37 0.15 AUTHOR Independent reconstruction half of the micrographs 1M3Y PDB experimental model RIGID BODY FIT Z-score of Cross Correlation scores REAL emd_20091_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 1200 1200 1200 -600 -600 -600 1200 1200 1200 2843.9998 2843.9998 2843.9998 90.0 90.0 90.0 X Y Z -2.389112 3.3013737 0.000000000024248 0.24738608 2.37 2.37 2.37 AUTHOR Independent reconstruction other half of the micrographs emd_20091_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 32 39 53 284 -161 -235 32 39 53 75.84 92.42999 125.60999 90.0 90.0 90.0 X Y Z -0.00000035901948 0.6517668 0.02248164 0.06756203 2.37 2.37 2.37 AUTHOR Anchor protein 1 emd_20091_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 51 34 44 302 -186 -155 51 34 44 120.869995 80.579994 104.28 90.0 90.0 90.0 X Y Z -0.0000013188774 0.62578547 0.019520665 0.06293551 2.37 2.37 2.37 AUTHOR Anchor protein 2 emd_20091_additional_4.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 55 31 36 265 -254 -128 55 31 36 130.34999 73.46999 85.31999 90.0 90.0 90.0 X Y Z -0.00000018437419 0.64535975 0.024235327 0.07067901 2.37 2.37 2.37 AUTHOR Anchor protein 3 emd_20091_additional_5.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 45 53 29 215 -285 -191 45 53 29 106.649994 125.60999 68.729996 90.0 90.0 90.0 X Y Z -0.000026545133 0.6688391 0.02155029 0.0683653 2.37 2.37 2.37 AUTHOR Anchor protein 4 emd_20091_additional_6.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 33 49 41 227 -229 -252 33 49 41 78.21 116.13 97.17 90.0 90.0 90.0 X Y Z -0.0000007215817 0.6372176 0.022394663 0.06696575 2.37 2.37 2.37 AUTHOR Anchor protein 5 emd_20091_additional_7.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 110 276 248 303 -260 -231 110 276 248 260.69998 654.12 587.75995 90.0 90.0 90.0 X Y Z -0.000000000000024 20.581985 0.50696963 1.8552426 2.37 2.37 2.37 AUTHOR An asymmetric unit from the icosahedrally-symmetric map emd_20091_additional_8.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 156 554 546 219 -276 -275 156 554 546 369.71997 1312.98 1294.0199 90.0 90.0 90.0 X Y Z -0.000000000000008 6.4163527 0.14669122 0.5637307 2.37 2.37 2.37 AUTHOR Inner half of the bilayer lipid membrane emd_20091_additional_9.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 170 586 562 219 -292 -290 170 586 562 402.9 1388.82 1331.94 90.0 90.0 90.0 X Y Z -0.00000000000001 7.034854 0.14068443 0.60363555 2.37 2.37 2.37 AUTHOR Outer half of the bilayer lipid membrane emd_20091_additional_10.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 160 186 192 219 -312 -278 160 186 192 379.19998 440.81998 455.03998 90.0 90.0 90.0 X Y Z -0.000000000000021 18.303667000000001 0.4742383 1.7597251 2.37 2.37 2.37 AUTHOR A pentasymmetron emd_20091_additional_11.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 64 54 50 346 -89 -104 64 54 50 151.68 127.979996 118.49999 90.0 90.0 90.0 X Y Z 0.0 16.078673999999999 0.55949 1.8433632 2.37 2.37 2.37 AUTHOR Averaged densities from trimers from a trisymmetron within the asymmetric unit emd_20091_additional_12.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 152 420 438 278 -165 -270 152 420 438 360.24 995.39996 1038.0599 90.0 90.0 90.0 X Y Z -0.000000000000023 20.581985 0.33599964 1.5331903 2.37 2.37 2.37 AUTHOR Trisymmetron 1 of 5 around a pentasymmetron emd_20091_additional_13.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 280 357 431 116 -404 -164 280 357 431 663.6 846.08997 1021.47 90.0 90.0 90.0 X Y Z -0.000000000000019 18.227314 0.2180688 1.161835 2.37 2.37 2.37 AUTHOR Trisymmetron 2 of 5 around a pentasymmetron emd_20091_additional_14.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 189 430 -58 -416 -268 400 189 430 947.99994 447.93 1019.1 90.0 90.0 90.0 X Y Z -0.000000000000019 18.699186000000001 0.28900462 1.3325149 2.37 2.37 2.37 AUTHOR Trisymmetron 3 of 5 around a pentasymmetron emd_20091_additional_25.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 429 345 290 -163 -334 -432 429 345 290 1016.73 817.64996 687.3 90.0 90.0 90.0 X Y Z -0.000000000000019 18.288333999999999 0.21888815 1.1687694 2.37 2.37 2.37 AUTHOR Trisymmetron 4 of 5 around a pentasymmetron emd_20091_additional_16.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 355 411 289 23 -249 -431 355 411 289 841.35 974.06995 684.93 90.0 90.0 90.0 X Y Z -0.000000000000019 19.049420000000001 0.22280523 1.2078487 2.37 2.37 2.37 AUTHOR Trisymmetron 5 of 5 around a pentasymmetron emd_20091_additional_17.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 112 270 110 242 -219 -271 112 270 110 265.44 639.89996 260.69998 90.0 90.0 90.0 X Y Z -0.0013134826 11.141406 0.04527479 0.4067531 2.3700001 2.37 2.37 AUTHOR Zip proteins 1 emd_20091_additional_18.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 82 90 282 303 -177 -224 82 90 282 194.34 213.29999 668.33997 90.0 90.0 90.0 X Y Z -0.00000003861604 10.997515999999999 0.07094925 0.50529677 2.37 2.37 2.37 AUTHOR Zip proteins 2 emd_20091_additional_19.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 178 166 188 176 -339 -152 178 166 188 421.86 393.41998 445.55997 90.0 90.0 90.0 X Y Z -0.00013166029 9.823964999999999 0.027113682 0.300502 2.37 2.37 2.37 AUTHOR Zip proteins 3 emd_20091_additional_20.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 257 84 133 53 -327 -235 257 84 133 609.08997 199.07999 315.21 90.0 90.0 90.0 X Y Z -0.00008796606 9.740235999999999 0.05245255 0.41400456 2.37 2.37 2.37 AUTHOR Zip proteins 4 emd_20091_additional_21.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 130 200 173 136 -277 -351 130 200 173 308.09998 473.99997 410.00998 90.0 90.0 90.0 X Y Z -0.0003249189 9.867138000000001 0.033008814 0.3334018 2.37 2.37 2.37 AUTHOR Zip proteins 5