2024-11-20 REL RCSB RCSB RCSB 2019-04-02 2019-05-01 2019-05-15 2024-11-20 Cryo-EM structure of Her2 extracellular domain-Trastuzumab Fab-Pertuzumab Fab complex Hao Y Yu X Her2 extracellular domain, Trastuzumab, Pertuzumab, transferase-immune system complex Hao Y Yu X Bai Y McBride HJ Huang X Cryo-EM Structure of HER2-trastuzumab-pertuzumab complex. Plos One US 14 e0216095 e0216095 2019 31042744 doi:10.1371/journal.pone.0216095 1932-6203 6oge FULLOVERLAP Her2 extracellular domain-Trastuzumab Fab-Pertuzumab Fab complex Her2 extracellular domain-Trastuzumab Fab-Pertuzumab Fab complex 0 1 2 3 4 5 Homo sapiens Human HER2 extracellular domain 1 1 Homo sapiens Pertuzumab Fab 1 2 3 Homo sapiens Trastuzumab Fab 1 4 5 Homo sapiens Receptor tyrosine-protein kinase erbB-2 Homo sapiens 0.068536844 1 Homo sapiens LEVO TQVCTGTDMKLRLPASPETHLDMLRHLYQGCQVVQGNLELTYLPTNASLSFLQDIQEVQGYVLIAHNQVRQVPLQRLRIV RGTQLFEDNYALAVLDNGDPLNNTTPVTGASPGGLRELQLRSLTEILKGGVLIQRNPQLCYQDTILWKDIFHKNNQLALT LIDTNRSRACHPCSPMCKGSRCWGESSEDCQSLTRTVCAGGCARCKGPLPTDCCHEQCAAGCTGPKHSDCLACLHFNHSG ICELHCPALVTYNTDTFESMPNPEGRYTFGASCVTACPYNYLSTDVGSCTLVCPLHNQEVTAEDGTQRCEKCSKPCARVC YGLGMEHLREVRAVTSANIQEFAGCKKIFGSLAFLPESFDGDPASNTAPLQPEQLQVFETLEEITGYLYISAWPDSLPDL SVFQNLQVIRGRILHNGAYSLTLQGLGISWLGLRSLRELGSGLALIHHNTHLCFVHTVPWDQLFRNPHQALLHTANRPED ECVGEGLACHQLCARGHCWGPGPTQCVNCSQFLRGQECVEECRVLQGLPREYVNARHCLPCHPECQPQNGSVTCFGPEAD QCVACAHYKDPPFCVARCPSGVKPDLSYMPIWKFPDEEGACQPCPINCTHSCVDLDDKGCPA P04626 2.7.10.1 Pertuzumab FAB LIGHT CHAIN Homo sapiens 0.023548151999999996 1 Cricetulus griseus LEVO DIQMTQSPSSLSASVGDRVTITCKASQDVSIGVAWYQQKPGKAPKLLIYSASYRYTGVPSRFSGSGSGTDFTLTISSLQP EDFATYYCQQYYIYPYTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC P01834 Pertuzumab FAB HEAVY CHAIN Homo sapiens 0.023674485999999998 1 Cricetulus griseus LEVO EVQLVESGGGLVQPGGSLRLSCAASGFTFTDYTMDWVRQAPGKGLEWVADVNPNSGGSIYNQRFKGRFTLSVDRSKNTLY LQMNSLRAEDTAVYYCARNLGPSFYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC P0DOX5 Trastuzumab FAB LIGHT CHAIN Homo sapiens 0.023466031 1 Cricetulus griseus LEVO DIQMTQSPSSLSASVGDRVTITCRASQDVNTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSRSGTDFTLTISSLQP EDFATYYCQQHYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC P01834 Trastuzumab FAB HEAVY CHAIN Homo sapiens 0.02342518 1 Cricetulus griseus LEVO EVQLVESGGGLVQPGGSLRLSCAASGFNIKDTYIHWVRQAPGKGLEWVARIYPTNGYTRYADSVKGRFTISADTSKNTAY LQMNSLRAEDTAVYYCSRWGGDGFYAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS WNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP Q6GMX6 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 5 NAG singleParticle particle 2.4 7.5 20.0 C8H18N2O4S HEPES 150.0 NaCl Sodium Chloride Quantifoil R1.2/1.3 300 ETHANE 100 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 -3.5 -1.5 130000.0 GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 6.0 45.0 1 1032611 C1 4.36 FSC 0.143 CUT-OFF cisTEM 398409 RANDOM ASSIGNMENT cisTEM MAXIMUM LIKELIHOOD emd_20055.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 208 208 208 0 0 0 208 208 208 220.272 220.272 220.272 90.0 90.0 90.0 Z Y X -10.745524 18.676493000000001 -0.000000000007725 1.0 1.059 1.059 1.059 4.2 AUTHOR Sharpened map with phenix.auto_sharpen FLEXIBLE FIT REAL