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        <key_dates>
            <deposition>2019-03-29</deposition>
            <header_release>2019-04-10</header_release>
            <map_release>2019-07-10</map_release>
            <update>2025-05-14</update>
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        <grant_support>
            <grant_reference>
                <funding_body>National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)</funding_body>
                <code>AI030492</code>
                <country>United States</country>
            </grant_reference>
        </grant_support>
        <title>Helical reconstruction of Type III Secretion System Needle filament mutant-PrgI S49A</title>
        <authors_list>
            <author>Guo EZ</author>
            <author>Galan JE</author>
        </authors_list>
        <keywords>Type III secretion, helical reconstruction, PrgI filament, salmonella, PROTEIN TRANSPORT</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Guo EZ</author>
                    <author order="2">Desrosiers DC</author>
                    <author order="3">Zalesak J</author>
                    <author ORCID="0000-0002-5779-4935" order="4">Tolchard J</author>
                    <author order="5">Berbon M</author>
                    <author ORCID="0000-0003-3723-9552" order="6">Habenstein B</author>
                    <author order="7">Marlovits T</author>
                    <author ORCID="0000-0001-7176-7813" order="8">Loquet A</author>
                    <author ORCID="0000-0002-6531-0355" order="9">Galan JE</author>
                    <title>A polymorphic helix of a Salmonella needle protein relays signals defining distinct steps in type III secretion.</title>
                    <journal_abbreviation>Plos Biol.</journal_abbreviation>
                    <country>US</country>
                    <volume>17</volume>
                    <first_page>e3000351</first_page>
                    <last_page>e3000351</last_page>
                    <year>2019</year>
                    <external_references type="PUBMED">31260457</external_references>
                    <external_references type="DOI">doi:10.1371/journal.pbio.3000351</external_references>
                    <external_references type="ISSN">1545-7885</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-20044</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-20045</emdb_id>
                <relationship>
                    <other>other EM volume</other>
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            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-20046</emdb_id>
                <relationship>
                    <other>other EM volume</other>
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                <pdb_id>6ofe</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
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    </crossreferences>
    <sample>
        <name>PrgI S49A</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>PrgI S49A</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <details>single mutant of PrgI</details>
                <natural_source database="NCBI">
                    <organism ncbi="216597">Salmonella typhimurium (strain SL1344)</organism>
                </natural_source>
            </complex_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>Protein PrgI</name>
                <natural_source database="NCBI">
                    <organism ncbi="216597">Salmonella typhimurium (strain SL1344)</organism>
                    <strain>SL1344</strain>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.009131145</theoretical>
                </molecular_weight>
                <number_of_copies>20</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="469008">Escherichia coli BL21(DE3)</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>GSHMATPWSGYLDDVSAKFDTGVDNLQTQVTEALDKLAAKPSDPALLAAYQAKLSEYNLYRNAQSNTVKVFKDIDAAIIQ
NFR</string>
                    <external_references type="UNIPROTKB">A0A0H3NF82</external_references>
                </sequence>
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>helical</method>
            <aggregation_state>filament</aggregation_state>
            <specimen_preparation_list>
                <helical_preparation preparation_id="1">
                    <buffer>
                        <ph>7.5</ph>
                    </buffer>
                    <grid>
                        <details>unspecified</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                    </vitrification>
                </helical_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <helical_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/Å^2">47.2</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </helical_microscopy>
            </microscopy_list>
            <helical_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <final_reconstruction>
                    <applied_symmetry>
                        <helical_parameters>
                            <delta_z units="Å">4.19</delta_z>
                            <delta_phi units="deg">63.35</delta_phi>
                            <axial_symmetry>C1</axial_symmetry>
                        </helical_parameters>
                    </applied_symmetry>
                    <resolution units="Å" res_type="BY AUTHOR">3.61</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <number_images_used>14070</number_images_used>
                </final_reconstruction>
                <ctf_correction>
                    <type>PHASE FLIPPING AND AMPLITUDE CORRECTION</type>
                </ctf_correction>
                <startup_model type_of_model="OTHER"/>
                <final_angle_assignment>
                    <type>NOT APPLICABLE</type>
                </final_angle_assignment>
            </helical_processing>
        </structure_determination>
    </structure_determination_list>
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        <file>emd_20043.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>256</col>
            <row>256</row>
            <sec>256</sec>
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        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
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        <spacing>
            <x>256</x>
            <y>256</y>
            <z>256</z>
        </spacing>
        <cell>
            <a units="Å">267.52</a>
            <b units="Å">267.52</b>
            <c units="Å">267.52</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
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        <statistics>
            <minimum>-0.05316718</minimum>
            <maximum>0.100388534</maximum>
            <average>0.00028997037</average>
            <std>0.0036552488</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">1.045</x>
            <y units="Å">1.045</y>
            <z units="Å">1.045</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.026</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-20043::::</label>
        <annotation_details>in vitro polymerized PrgI S49A filaments</annotation_details>
    </map>
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