<emd emdb_id="EMD-1995" version="3.0.1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
    <admin>
        <current_status>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2011-11-19</deposition>
            <header_release>2011-12-16</header_release>
            <map_release>2012-08-15</map_release>
            <update>2012-10-24</update>
        </key_dates>
        <title>Electron density map of a composite coiled-coil fibril comprising multiple self-assembling fibre peptides.</title>
        <authors_list>
            <author>Sharp TH</author>
            <author>Bruning M</author>
            <author>Mantell J</author>
            <author>Sessions RB</author>
            <author>Thomson AR</author>
            <author>Zaccai NR</author>
            <author>Brady RL</author>
            <author>Verkade P</author>
            <author>Woolfson DN</author>
        </authors_list>
        <keywords>CryoTEM, coiled coil, fibrous proteins, protein design, self-assembly</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Sharp TH</author>
                    <author order="2">Bruning M</author>
                    <author order="3">Mantell J</author>
                    <author order="4">Sessions RB</author>
                    <author order="5">Thomson AR</author>
                    <author order="6">Zaccai NR</author>
                    <author order="7">Brady RL</author>
                    <author order="8">Verkade P</author>
                    <author order="9">Woolfson DN</author>
                    <title>Cryo-transmission electron microscopy structure of a gigadalton peptide fiber of de novo design.</title>
                    <journal>PROC.NAT.ACAD.SCI.USA</journal>
                    <volume>109</volume>
                    <first_page>13266</first_page>
                    <last_page>13271</last_page>
                    <year>2012</year>
                    <external_references type="PUBMED">22847414</external_references>
                    <external_references type="DOI">doi:10.1073/pnas.1118622109</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
    </crossreferences>
    <sample>
        <name>Self-assembling peptide fibre</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>Self-assembling peptide fibre</name>
                <details>Samples contains  approximately 30,000,000 peptides</details>
                <oligomeric_state>Many millions of peptides self-assemble to form a gigadalton peptide fibre</oligomeric_state>
                <number_unique_components>2</number_unique_components>
            </sample_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name synonym="Self-assembling fibre">KIAALKQKIASLKQEIDALEYENDALEQ</name>
                <natural_source database="NCBI">
                    <organism ncbi="32630">synthetic construct</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.00317</theoretical>
                </molecular_weight>
                <details>Peptides were synthesized by microwave-assisted solid-phase peptide synthesis using standard HBTU activation. They heterodimerize to form offset dimeric coiled coils with complementary sticky ends that assemble to form extended coiled coil fibrils. These fibrils pack laterally to generate large proteinaceous fibres on average 82 nm in diameter and 42 micrometers in length.</details>
                <recombinant_exp_flag>false</recombinant_exp_flag>
                <recombinant_expression database="NCBI" />
                <sequence />
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name synonym="Self-assembling fibre">KIRRLKQKNARLKQEIAALEYEIAALEQ</name>
                <natural_source database="NCBI">
                    <organism ncbi="32630">synthetic construct</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.00332</theoretical>
                </molecular_weight>
                <details>Peptides were synthesized by microwave-assisted solid-phase peptide synthesis using standard HBTU activation. They heterodimerize to form offset dimeric coiled coils with complementary sticky ends that assemble to form extended coiled coil fibrils. These fibrils pack laterally to generate large proteinaceous fibres on average 82 nm in diameter and 42 micrometers in length.</details>
                <recombinant_exp_flag>false</recombinant_exp_flag>
                <recombinant_expression database="NCBI" />
                <sequence />
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>electronCrystallography</method>
            <aggregation_state>twoDArray</aggregation_state>
            <specimen_preparation_list>
                <crystallography_preparation preparation_id="1">
                    <concentration units="mg/mL">0.325</concentration>
                    <buffer>
                        <ph>7.4</ph>
                        <details>10 mM MOPS</details>
                    </buffer>
                    <grid>
                        <details>Lacey-carbon grid</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">100</chamber_humidity>
                        <chamber_temperature units="K">98</chamber_temperature>
                        <instrument>OTHER</instrument>
                        <details>Vitrification instrument: Vitrobot</details>
                        <method>Blot 1 sec.</method>
                    </vitrification>
                    <crystal_formation />
                </crystallography_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <crystallography_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI 20</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>LAB6</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <nominal_cs units="mm">2</nominal_cs>
                    <nominal_defocus_min units="&#181;m">1.5</nominal_defocus_min>
                    <nominal_defocus_max units="&#181;m">1.5</nominal_defocus_max>
                    <nominal_magnification>50000.0</nominal_magnification>
                    <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
                    <details>Low dose software used</details>
                    <date>2010-04-20</date>
                    <image_recording_list>
                        <image_recording>
                            <digitization_details>
                                <sampling_interval units="&#181;m">11</sampling_interval>
                            </digitization_details>
                            <number_real_images>1</number_real_images>
                            <average_electron_dose_per_image units="e/&#8491;^2">10</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                    <specimen_holder>liquid nitrogen-cooled cryo specimen holder</specimen_holder>
                    <tilt_angle_min>0</tilt_angle_min>
                    <tilt_angle_max>0</tilt_angle_max>
                    <tilt_series>
                        <axis1>
                            <min_angle units="deg">0</min_angle>
                            <max_angle units="deg">0</max_angle>
                        </axis1>
                    </tilt_series>
                </crystallography_microscopy>
            </microscopy_list>
            <crystallography_processing image_processing_id="1">
                <final_reconstruction>
                    <algorithm>OTHER</algorithm>
                    <resolution res_type="BY AUTHOR" units="&#8491;">8.0</resolution>
                    <resolution_method>OTHER</resolution_method>
                    <software_list>
                        <software>
                            <name>2dx, BHP</name>
                        </software>
                    </software_list>
                </final_reconstruction>
                <crystal_parameters>
                    <unit_cell>
                        <a units="&#8491;">20.8</a>
                        <b units="&#8491;">20.8</b>
                        <c units="&#8491;">125.4</c>
                        <gamma units="deg">120</gamma>
                        <alpha units="deg">90</alpha>
                        <beta units="deg">90</beta>
                    </unit_cell>
                    <plane_group>P 1</plane_group>
                </crystal_parameters>
                <ctf_correction>
                    <details>Each image</details>
                </ctf_correction>
            </crystallography_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="5022">
        <file>emd_1995.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>101</col>
            <row>101</row>
            <sec>126</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>101</x>
            <y>101</y>
            <z>126</z>
        </spacing>
        <cell>
            <a units="&#8491;">63.326996</a>
            <b units="&#8491;">63.326996</b>
            <c units="&#8491;">79.002</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-65.063873290000004</minimum>
            <maximum>32.860794069999997</maximum>
            <average>-13.47298717</average>
            <std>25.133878710000001</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">0.627</x>
            <y units="&#8491;">0.627</y>
            <z units="&#8491;">0.627</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>15.5</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <annotation_details>This is a map of a coiled coil derived from a micrograph of a 3D protein fibre processed using 2dx</annotation_details>
        <details>::::EMDATABANK.org::::EMD-1995::::</details>
    </map>
</emd>