<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1991" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2011-11-17</deposition>
         <header_release>2012-01-27</header_release>
         <map_release>2012-02-24</map_release>
         <update>2012-08-29</update>
      </key_dates>
      <title>Structure of complement component complex, sC5b9.</title>
      <authors_list>
         <author>Bubeck D</author>
         <author>Roversi P</author>
         <author>Hakabyan S</author>
         <author>Morgan BP</author>
         <author>Lea SM</author>
         <author>Llorca O</author>
      </authors_list>
      <keywords>complement terminal pathway, humoral immune pore, MACPF domain</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Hadders MA</author>
               <author order="2">Bubeck D</author>
               <author order="3">Roversi P</author>
               <author order="4">Hakobyan S</author>
               <author order="5">Forneris F</author>
               <author order="6">Morgan BP</author>
               <author order="7">Pangburn MK</author>
               <author order="8">Llorca O</author>
               <author order="9">Lea SM</author>
               <author order="10">Gros P</author>
               <title>Assembly and regulation of the membrane attack complex based on structures of C5b6 and sC5b9.</title>
               <journal>CELL REP.</journal>
               <volume>1</volume>
               <first_page>200</first_page>
               <last_page>207</last_page>
               <year>2012</year>
               <external_references type="PUBMED">22832194</external_references>
               <external_references type="DOI">doi:10.1016/j.celrep.2012.02.003</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>sC5b9</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>sC5b9</name>
            <details>The sample was monodisperse</details>
            <oligomeric_state>7, C8, and C9. In addition it contains clusterin and vitronectin with an unknown stoichiometry.</oligomeric_state>
            <number_unique_components>7</number_unique_components>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="sC5b9, or sMAC">C5b</name>
            <natural_source database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>Human</synonym_organism>
               <tissue>Plasma</tissue>
            </natural_source>
            <number_of_copies>1</number_of_copies>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="2">
            <name synonym="sC5b9, or sMAC">C6</name>
            <natural_source database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>Human</synonym_organism>
               <tissue>Plasma</tissue>
            </natural_source>
            <number_of_copies>1</number_of_copies>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="3">
            <name synonym="sC5b9, or sMAC">C7</name>
            <natural_source database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>Human</synonym_organism>
               <tissue>Plasma</tissue>
            </natural_source>
            <number_of_copies>1</number_of_copies>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="4">
            <name synonym="sC5b9, or sMAC">C8</name>
            <natural_source database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>Human</synonym_organism>
               <tissue>Plasma</tissue>
            </natural_source>
            <number_of_copies>1</number_of_copies>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="5">
            <name synonym="sC5b9, or sMAC">C9</name>
            <natural_source database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>Human</synonym_organism>
               <tissue>Plasma</tissue>
            </natural_source>
            <number_of_copies>1</number_of_copies>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="6">
            <name synonym="sC5b9, or sMAC">Clusterin</name>
            <natural_source database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>Human</synonym_organism>
               <tissue>Plasma</tissue>
            </natural_source>
            <number_of_copies>1</number_of_copies>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="7">
            <name synonym="sC5b9, or sMAC">vibronectin</name>
            <natural_source database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>Human</synonym_organism>
               <tissue>Plasma</tissue>
            </natural_source>
            <number_of_copies>1</number_of_copies>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.1</concentration>
               <buffer>
                  <ph>7.5</ph>
                  <details>150mM NaCl, 50mM Tris, 1mM CaCl2, and 1mM MgCl2</details>
               </buffer>
               <grid>
                  <details>quantifoil holey carbon grids</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <instrument>OTHER</instrument>
                  <details>Vitrification instrument: FEI Vitrobot</details>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>JEOL 2200FS</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">200</acceleration_voltage>
               <nominal_cs units="mm">2.0</nominal_cs>
               <nominal_defocus_min units="&#181;m">3.0</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">6.0</nominal_defocus_max>
               <nominal_magnification>54400.0</nominal_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <specialist_optics>
                  <energy_filter>
                     <name>OMEGA</name>
                  </energy_filter>
               </specialist_optics>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">GATAN ULTRASCAN 4000 (4k x 4k)</film_or_detector_model>
                     <number_real_images>405</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">10</average_electron_dose_per_image>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>single-tilt cryo holder</specimen_holder>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <ctf_correction>
               <details>Bsoft, phase flip on each particle</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">24.0</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>EMAN2, XMIPP</name>
                  </software>
               </software_list>
               <number_images_used>18983</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="13185">
      <file>emd_1991.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>150</col>
         <row>150</row>
         <sec>150</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>150</x>
         <y>150</y>
         <z>150</z>
      </spacing>
      <cell>
         <a units="&#8491;">414.0</a>
         <b units="&#8491;">414.0</b>
         <c units="&#8491;">414.0</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.02482872</minimum>
         <maximum>0.09138546</maximum>
         <average>0.00034994</average>
         <std>0.00500717</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">2.76</x>
         <y units="&#8491;">2.76</y>
         <z units="&#8491;">2.76</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.0122</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>This is an image of a surface rendered view of the sC5b9 complex</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1991::::</details>
   </map>
   <interpretation>
      <modelling_list>
         <modelling>
            <initial_model>
               <access_code>3OJY</access_code>
               <chain>
                  <chain_id>A</chain_id>
               </chain>
               <chain>
                  <chain_id>B</chain_id>
               </chain>
               <chain>
                  <chain_id>C</chain_id>
               </chain>
            </initial_model>
            <refinement_protocol>RIGID BODY FIT</refinement_protocol>
            <software_list>
               <software>
                  <name>Chimera</name>
               </software>
            </software_list>
            <details>PDBEntryID_givenInChain. Protocol: Rigid Body</details>
            <target_criteria>Correlation Coefficient</target_criteria>
            <refinement_space>REAL</refinement_space>
         </modelling>
      </modelling_list>
   </interpretation>
</emd>