REL PDBe PDBe PDBe 2011-11-08 2012-08-01 2012-08-01 2012-08-01 Structure of the full human RXR-VDR nuclear receptor heterodimer complex with its DR3 target DNA Orlov I Rochel N Moras D Klaholz BP Nuclear receptor, retinoic acid, vitamin D, DNA response element Orlov I Rochel N Moras D Klaholz BP Structure of the full human RXR/VDR nuclear receptor heterodimer complex with its DR3 target DNA. EMBO J. 31 291 300 2012 22179700 doi:10.1038/emboj.2011.445 full human RXR-VDR nuclear receptor heterodimer complex with its DR3 target DNA response element full human RXR-VDR nuclear receptor heterodimer complex with its DR3 target DNA response element 3 0.1 0.1 VDR-RXR Homo sapiens Human 1 hetero dimer true Escherichia coli pACYC singleParticle particle 0.15 7.5
Tris 20 mM pH7.5, NaCl 50 mM, KCl 50 mM, MgCl2 4mM, DTT 5mM
 NEGATIVE
no staining, cryo on holey carbon film
300 mesh Cu/Rh
 ETHANE 100 OTHER
Vitrification instrument: Vitrobot
2 seconds FEI TECNAI F20 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2.0 2.0 4.0 50000.0 GATAN LIQUID NITROGEN KODAK SO-163 FILM PRIMESCAN 5.8 20 20 16. Eucentric
EMAN-1 boxer semi-automatic selection and visual control of each boxed particle
each particle
 C1 OTHER 12.0 FSC 0.5 CUT-OFF IMAGIC
resolution 12.3A or 9.1 according to FSC at 0.5 or 0.143 cut-off
19938 emd_1985.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 -64 -63 -64 128 128 128 256.0 256.0 256.0 90.0 90.0 90.0 X Y Z -2.59364676 16.339492799999999 0.01883154 0.34013131 2.0 2.0 2.0 0.5 AUTHOR VDR-RXR DR3 DNA complex
::::EMDATABANK.org::::EMD-1985::::
 1DKF A RIGID BODY FIT IMAGIC, pyMOL
PDBEntryID_givenInChain. Protocol: rigid body. The domains were separately fitted by manual docking using the program Pymol
REAL 1DB1 A RIGID BODY FIT IMAGIC, pyMOL
PDBEntryID_givenInChain. Protocol: rigid body. The domains were separately fitted by manual docking using the program Pymol
REAL 1YNW A RIGID BODY FIT IMAGIC, pyMOL
PDBEntryID_givenInChain. Protocol: rigid body. The domains were separately fitted by manual docking using the program Pymol
REAL 2NLL A RIGID BODY FIT IMAGIC, pyMOL
PDBEntryID_givenInChain. Protocol: rigid body. The domains were separately fitted by manual docking using the program Pymol
REAL