2024-11-20 REL PDBe PDBe PDBe 2024-02-16 2024-10-09 2024-10-09 2024-11-20 UK Research and Innovation (UKRI) U105170648 United Kingdom Wellcome Trust 222503/Z/21/Z United Kingdom Human RNF213: focused refinement of E3-RING domain Naydenova K Randow F E3 ubiquitin ligase, ANTIMICROBIAL PROTEIN Crespillo-Casado A Pothukuchi P Naydenova K Yip MCJ Young JM Boulanger J Dharamdasani V Harper C Hammoudi PM Otten EG Boyle K Gogoi M Malik HS Randow F Recognition of phylogenetically diverse pathogens through enzymatically amplified recruitment of RNF213. Embo Rep. UK 25 4979 5005 2024 39375464 doi:10.1038/s44319-024-00280-w 1469-3178 Casado AC Pothukuchi P Naydenova K Yip MCJ Young JM Boulanger J Dharamdasani V Harper C Hammoudi PM Otten EG Boyle K Gogoi M Malik HS Randow F Recognition of phylogenetically diverse pathogens through enzymatically amplified recruitment of RNF213 Biorxiv US 2024 doi:10.1101/2024.09.24.614677 2692-8205 EMD-19653 other EM volume
Human RNF213 (composite map)
 EMD-19654 consensus EM volume
Human RNF213 (consensus refinement without accounting for flexibility)
 EMD-19655 focused EM volume
Human RNF213: focused refinement of ATPase domain
 EMD-19656 focused EM volume
Human RNF213: focused refinement of stalk domain
 EMD-19657 focused EM volume
Human RNF213: focused refinement of carbohydrate binding module (CBM) domain
 EMD-19658 focused EM volume
Human RNF213: focused refinement of E3 ligase domain
 Human RNF213 Human RNF213 0 1
E3 ubiquitin ligase RNF213, human, N1045D natural variant
Homo sapiens 0.59 singleParticle particle 8.0 UltrAuFoil GOLD 300 GOLD HOLEY ARRAY ETHANE HOMEMADE PLUNGER TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.5 3.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON IV (4k x 4k) 4096 4096 1 4.86 29.8 1 3.1 FSC 0.143 CUT-OFF 143490 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_19659.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 471.552 471.552 471.552 90.0 90.0 90.0 X Y Z -0.021386413 0.048687425 -0.00001287838 0.00061951106 0.921 0.921 0.921 0.007 AUTHOR Unsharpened map of RNF213 E3-RING domain after focused refinement AlphaFold in silico model AB INITIO MODEL emd_19659_msk_1.map emd_19659_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 471.552 471.552 471.552 90.0 90.0 90.0 X Y Z -0.027388789 0.05392489 -0.000012070028 0.0011731315 0.921 0.921 0.921 AUTHOR Half-map (1) of RNF213 E3-RING domain focused refinement emd_19659_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 471.552 471.552 471.552 90.0 90.0 90.0 X Y Z -0.025907129 0.052941035 -0.000011060689 0.0011771151 0.921 0.921 0.921 AUTHOR Half-map (2) of RNF213 E3-RING domain focused refinement