<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1965" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2011-09-12</deposition>
         <header_release>2011-09-30</header_release>
         <map_release>2011-10-21</map_release>
         <update>2011-10-21</update>
      </key_dates>
      <title>Structural and Functional Studies of LRP6 Ectodomain Reveal a Platform for Wnt Signaling</title>
      <authors_list>
         <author>Chen S</author>
         <author>Bubeck D</author>
         <author>MacDonald BT</author>
         <author>Liang WX</author>
         <author>Mao JH</author>
         <author>Malinauskas T</author>
         <author>Llorca O</author>
         <author>Aricescu AR</author>
         <author>Siebold C</author>
         <author>He X</author>
         <author>Jones EY</author>
      </authors_list>
      <keywords>LDL-receptor-related protein 6, Wnt signaling pathway, Wnt co-receptor</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Chen S</author>
               <author order="2">Bubeck D</author>
               <author order="3">MacDonald BT</author>
               <author order="4">Liang WX</author>
               <author order="5">Mao JH</author>
               <author order="6">Malinauskas T</author>
               <author order="7">Llorca O</author>
               <author order="8">Aricescu AR</author>
               <author order="9">Siebold C</author>
               <author order="10">He X</author>
               <author order="11">Jones EY</author>
               <title>Structural and functional studies of LRP6 ectodomain reveal a platform for Wnt signaling.</title>
               <journal>DEV.CELL</journal>
               <volume>21</volume>
               <first_page>848</first_page>
               <last_page>861</last_page>
               <year>2011</year>
               <external_references type="PUBMED">22000855</external_references>
               <external_references type="DOI">doi:10.1016/j.devcel.2011.09.007</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Ectodomain of LRP6 residues 20 to 1361 and chaperone Mesd</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Ectodomain of LRP6 residues 20 to 1361 and chaperone Mesd</name>
            <details>The sample was monodisperse</details>
            <oligomeric_state>one LRP6 binds to one Mesd</oligomeric_state>
            <number_unique_components>2</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">0.2</experimental>
               <method>Multi angle light scattering</method>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="LRP6">LDL-receptor-related protein 6</name>
            <natural_source database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>Human</synonym_organism>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.1</experimental>
            </molecular_weight>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>Monomer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism>HEK293S</recombinant_organism>
               <recombinant_plasmid>pHLsec vector</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="2">
            <name synonym="Mesd">Mesoderm development protein</name>
            <natural_source database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>Human</synonym_organism>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.1</experimental>
            </molecular_weight>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>Monomer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism>HEK293S</recombinant_organism>
               <recombinant_plasmid>pHLsec vector</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.015</concentration>
               <buffer>
                  <ph>8.0</ph>
                  <details>150 mM NaCl,10 mM Tris-HCl</details>
               </buffer>
               <staining>
                  <type>NEGATIVE</type>
                  <details>Grids were negatively stained with 0.75% uranyl formate using the two-drop method</details>
               </staining>
               <grid>
                  <details>carbon-coated copper grids</details>
               </grid>
               <vitrification>
                  <cryogen_name>NONE</cryogen_name>
                  <instrument>OTHER</instrument>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>JEOL 1230</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>LAB6</electron_source>
               <acceleration_voltage units="kV">100</acceleration_voltage>
               <nominal_cs units="mm">2.9</nominal_cs>
               <nominal_magnification>72500.0</nominal_magnification>
               <specimen_holder_model>JEOL</specimen_holder_model>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">TVIPS TEMCAM-F416 (4k x 4k)</film_or_detector_model>
                     <digitization_details>
                        <sampling_interval units="&#181;m">4.56</sampling_interval>
                     </digitization_details>
                     <average_electron_dose_per_image units="e/&#8491;^2">10</average_electron_dose_per_image>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>single-tilt</specimen_holder>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">26.0</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>EMAN, XMIPP</name>
                  </software>
               </software_list>
               <number_images_used>7928</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="845">
      <file>emd_1965.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>60</col>
         <row>60</row>
         <sec>60</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>60</x>
         <y>60</y>
         <z>60</z>
      </spacing>
      <cell>
         <a units="&#8491;">273.6</a>
         <b units="&#8491;">273.6</b>
         <c units="&#8491;">273.6</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.0474625</minimum>
         <maximum>0.23142</maximum>
         <average>0.00110932</average>
         <std>0.0145592</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">4.56</x>
         <y units="&#8491;">4.56</y>
         <z units="&#8491;">4.56</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.0451</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>This is a surface rendering of the ectodomain of LRP6 bound to its chaperone Mesd</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1965::::</details>
   </map>
</emd>