REL PDBe PDBe PDBe 2011-08-22 2011-10-06 2011-10-06 2011-10-06 Human dynamin 1 deltaPRD polymer stabilized with GMPPCP Chappie JS Mears JA Fang S Leonard M Schmid SL Milligan RA Hinshaw JE Dyda F dynamin, endocytosis, GTP hydrolysis, membrane remodeling Chappie JS Mears JA Fang S Leonard M Schmid SL Milligan RA Hinshaw JE Dyda F A pseudoatomic model of the dynamin polymer identifies a hydrolysis-dependent powerstroke. CELL(CAMBRIDGE,MASS.) 147 209 222 2011 21962517 doi:10.1016/j.cell.2011.09.003 3zys FULLOVERLAP GMPPCP-stablized human dynamin 1 delta PRD polymer GMPPCP-stablized human dynamin 1 delta PRD polymer Helical assembly of dynamin tetramers 3 Human dynamin 1 delta PRD Homo sapiens Human Plasma membrane and cytosol
contains bound GMPPCP
Dimer true Escherichia coli BL21(DE3) PMALC2XP5D Human dynamin 1 pleckstrin homology domain Homo sapiens Human Plasma membrane and cytosol Dimer true Escherichia coli BL21(DE3) PSKB-LNB Interferon-induced GTP-binding protein Mx1 Homo sapiens Human Dimer true Escherichia coli PET11A helical filament 0.5 7.5
20 mM Hepes pH 7.5, 50 mM NaCl, 2 mM EGTA, 4 mM MgCl2, 1 mM DTT, 1 mg/ml 0.4 um 1,2-dioleoyl-sn-glycero-3-phospho-L-serine (DOPS) liposomes, 2 mM GMPPCP
400 mesh C-flat grids
 ETHANE 100 93 HOMEMADE PLUNGER
Vitrification instrument: Manual
Absorbed samples to grids, blotted, washed with 20 mM Hepes pH 7.5, blotted and plunged. FEI TECNAI 20 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 120 2 0.5 2.0 50000.0 GATAN LIQUID NITROGEN 93 95 objective lens astigmatism was corrected at 100,000X magnification GATAN ULTRASCAN 4000 (4k x 4k) 10
Images were collected on CCD
 Gatan 626 side entry cryo-stage 0 0 7.52 27.3 OTHER 12.2 FSC 0.5 CUT-OFF Spider
A total of 4,814 helical segments were incorporated by the IHRSR algorithm into the final reconstruction after 50 cycles
Each image using ACE2
 emd_1949.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 200 200 200 -100 -100 -99 200 200 200 452 452 452 90 90 90 X Y Z -749.477999999999952 817.053999999999974 37.000599999999999 200.730999999999995 2.26 2.26 2.26 227.0 AUTHOR Three-dimensional volume of deltaPRD human dynamin 1 polymer
::::EMDATABANK.org::::EMD-1949::::
 3ZYC A FLEXIBLE FIT YUP
PDBEntryID_givenInChain. Protocol: Manual and Flexible fitting. Models were initially placed manually and initial positions were refined using the YUP.SCX method of the YUP software package
REAL 3LJB A FLEXIBLE FIT YUP
PDBEntryID_givenInChain. Protocol: Manual and Flexible fitting. Models were initially placed manually and initial positions were refined using the YUP.SCX method of the YUP software package
REAL 1DYN A FLEXIBLE FIT YUP
PDBEntryID_givenInChain. Protocol: Manual and Flexible fitting. Models were initially placed manually and initial positions were refined using the YUP.SCX method of the YUP software package
REAL
emd_1949.tif