2024-05-15 REL PDBe PDBe PDBe 2023-12-14 2024-05-15 2024-05-15 2024-05-15 Chan Zuckerberg Initiative 2021-234666 United States Max Planck Society Germany Thinner is not always better: Optimising cryo lamellae for subtomogram averaging Tuijtel MW Cruz-Leon S Kreysing JP Welsch S Hummer G Beck M Turonova B In-situ Dictyostelium discoideum ribosome, RIBOSOME Tuijtel MW Cruz-Leon S Kreysing JP Welsch S Hummer G Beck M Turonova B Thinner is not always better: Optimizing cryo-lamellae for subtomogram averaging. Sci Adv US 10 eadk6285 eadk6285 2024 38669330 doi:10.1126/sciadv.adk6285 2375-2548 Tuijtel MW Cruz-Leon S Kreysing JP Welsch S Hummer G Beck M Turonova B Thinner is not always better: Optimising cryo lamellae for subtomogram averaging BiorXiv US doi:10.1101/2023.07.31.551274 2692-8205 Ribosome Ribosome 0
Ribosome
Dictyostelium discoideum AX2 cytoplasm 4 subtomogramAveraging cell 6.5 Quantifoil GOLD 200 GLOW DISCHARGE ETHANE 70 20 LEICA EM GP TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 2.5 4.5 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN TFS Selectris X 10 FEI FALCON IV (4k x 4k) 4096 4096 2 0.24 2.0 1 1 C2 3.9 FSC 0.143 CUT-OFF Warp 22586 261 168000 Template matching Warp MAXIMUM LIKELIHOOD Warp emd_19136.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 284 284 284 0 0 0 284 284 284 347.332 347.332 347.332 90.0 90.0 90.0 X Y Z -0.005388909 0.009880301 0.00008011366 0.00075962354 1.223 1.223 1.223 0.00196 AUTHOR Ribosome from Dictyostelium discoideum, from in-situ data using cryo-ET and STA. "high-quality" particles, 23k particles. emd_19136_additional_9.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 284 284 284 0 0 0 284 284 284 347.332 347.332 347.332 90.0 90.0 90.0 X Y Z -0.0054922486 0.0132974135 0.00027051652 0.0014561029 1.223 1.223 1.223 AUTHOR Ribosome from Dictyostelium discoideum, from in-situ data using cryo-ET and STA. "random" particles, 5k particles. emd_19136_additional_8.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 284 284 284 0 0 0 284 284 284 347.332 347.332 347.332 90.0 90.0 90.0 X Y Z -0.03909425 0.044078927 0.00026592548 0.0074771903 1.223 1.223 1.223 AUTHOR Ribosome from Dictyostelium discoideum, from in-situ data using cryo-ET and STA. "random" particles, 5k particles. Halfmap 2. emd_19136_additional_7.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 284 284 284 0 0 0 284 284 284 347.332 347.332 347.332 90.0 90.0 90.0 X Y Z -0.041625492 0.04248552 0.00027542296 0.007510966 1.223 1.223 1.223 AUTHOR Ribosome from Dictyostelium discoideum, from in-situ data using cryo-ET and STA. "random" particles, 5k particles. Halfmap 1. emd_19136_additional_6.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 284 284 284 0 0 0 284 284 284 347.332 347.332 347.332 90.0 90.0 90.0 X Y Z -0.0032213493 0.0075470787 0.00014416281 0.0007915146 1.223 1.223 1.223 AUTHOR Ribosome from Dictyostelium discoideum, from in-situ data using cryo-ET and STA. "high-quality" particles, 5k particles. emd_19136_additional_5.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 284 284 284 0 0 0 284 284 284 347.332 347.332 347.332 90.0 90.0 90.0 X Y Z -0.021208476 0.023412606 0.00014242914 0.0037806018 1.223 1.223 1.223 AUTHOR Ribosome from Dictyostelium discoideum, from in-situ data using cryo-ET and STA. "high-quality" particles, 5k particles. Halfmap 1 emd_19136_additional_4.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 284 284 284 0 0 0 284 284 284 347.332 347.332 347.332 90.0 90.0 90.0 X Y Z -0.020371702 0.02171799 0.00014571285 0.0037983074 1.223 1.223 1.223 AUTHOR Ribosome from Dictyostelium discoideum, from in-situ data using cryo-ET and STA. "high-quality" particles, 5k particles. Halfmap 2 emd_19136_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 284 284 284 0 0 0 284 284 284 347.332 347.332 347.332 90.0 90.0 90.0 X Y Z -0.0063929013 0.010567188 0.000056813544 0.0011894008 1.223 1.223 1.223 AUTHOR Ribosome from Dictyostelium discoideum, from in-situ data using cryo-ET and STA. "random" particles, 23k particles. halfmap 1 emd_19136_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 284 284 284 0 0 0 284 284 284 347.332 347.332 347.332 90.0 90.0 90.0 X Y Z -0.006461835 0.010590438 0.000056046687 0.0011923682 1.223 1.223 1.223 AUTHOR Ribosome from Dictyostelium discoideum, from in-situ data using cryo-ET and STA. "random" particles, 23k particles. halfmap 2 emd_19136_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 284 284 284 0 0 0 284 284 284 347.332 347.332 347.332 90.0 90.0 90.0 X Y Z -0.0044996464 0.008786527 0.000056431403 0.00066996965 1.223 1.223 1.223 AUTHOR Ribosome from Dictyostelium discoideum, from in-situ data using cryo-ET and STA. "random" particles, 23k particles. emd_19136_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 284 284 284 0 0 0 284 284 284 347.332 347.332 347.332 90.0 90.0 90.0 X Y Z -0.005369254 0.00922839 0.000080016136 0.0011065588 1.223 1.223 1.223 AUTHOR halfmap 2 "high-quality" particles, 23k particles. emd_19136_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 284 284 284 0 0 0 284 284 284 347.332 347.332 347.332 90.0 90.0 90.0 X Y Z -0.005240558 0.0097944075 0.00008023961 0.001109346 1.223 1.223 1.223 AUTHOR halfmap 1 "high-quality" particles, 23k particles.