2024-10-30 REL PDBe PDBe PDBe 2023-12-12 2024-01-10 2024-01-10 2024-10-30 Biotechnology and Biological Sciences Research Council (BBSRC) V002937/1 United Kingdom CryoEM structure of the plant helper NLR NRC2 in its resting state Selvaraj M Kamoun S Contreras MP NLR protein, Helper NLRl, plant immunity, R-protein, IMMUNE SYSTEM Selvaraj M Toghani A Pai H Sugihara Y Kourelis J Yuen ELH Ibrahim T Zhao H Xie R Maqbool A De la Concepcion JC Banfield MJ Derevnina L Petre B Lawson DM Bozkurt TO Wu CH Kamoun S Contreras MP Activation of plant immunity through conversion of a helper NLR homodimer into a resistosome. Plos Biol. US 22 e3002868 e3002868 2024 39423240 doi:10.1371/journal.pbio.3002868 1545-7885 Selvaraj M Kamoun S Contreras MP Activation of plant immunity through conversion of a helper NLR homodimer into a resistosome Biorxiv US 2023 doi:10.1101/2023.12.17.572070 2692-8205 8rfh FULLOVERLAP NRC2 heler NLR dimer with ADP NRC2 heler NLR dimer with ADP 0 1
This is helper NLR protein NRC2 in inactive state with ADP nucleotide bound state
Nicotiana benthamiana 0.1 NRC2a Nicotiana benthamiana leaves 0.10752239799999999 2 Nicotiana benthamiana LEVO MANVAVEFLVQNLMQLLRDNAELIVGVKDSAESLLQDLNDFNAFLKQTAKSRTENDVHKELVKKIKTVVNSAEDAIDKFV IEAKLHKDKGVGRFVDVKHYKRVYDVAGEIKTIRDKVKEIRLNNALDLQALQDEDQSAKGVQERKPPVVEEDDVVGFEEE ADKVINRLLGGSSGLEVVPVVGMPGLGKTTLANKIYKHPDIGYQFFTRIWVYVSQSYRRRELFLNIISKFTRNTKQYHDM CEEDLADEIEDFLGKGGKYLIVLDDVWSPDAWERIRIAFPNNNKSNRILLTTRDSKVAKQCKQCIGIPHDLKFLTEDESW ILLEKKVFHKDKCPPELELSGKSIAKKCNGLPLAIVVIAGALIGKGKTSREWKQVDESVGEHLINKDQPENCNKLVQLSY DRLSYDLKACFLYCGAFPGGFEIPAWKLIRLWIAEGFIQYKGHLSLECKAEDNLNDLINRNLVMVMQRTSDGQIKTCRLH DMLHEFCRQEAMKEENLFQEIKLGAEQYFPGKRELATYRRLCIHSSVLEFISTKPSGEHVRSFLSFSLKKIEMPSVDIPT IPKGFPLLRVFDVESINFSRFSKEFFQLYHLRYIAFSSDTIKIIPKHIGELWNIQTLIINTQQRSLDIQANIWNMERLRH LHTNSSAKLPVPVTPRSSKVPLVNQSLQTLSTIAPESCTEEVFARTPNLKKLGIRGKIAVLLEPNKSLLKNVKKLESLEN LKLINDSSQTGKGLRLPPSYIFPTKLRKLSLVDTWLEWNDMSILGQMEHLEVLKLKENGFMGECWESVGGFCSLLVLWIE RTDLVSWKASADHFPRLKHLVLICCDKLKEIPIGLADIRSFQVMELQNSTKTAAISARGIRDKKDKQTQEGTNNNGFKLS IFPPDLGSGSGRGSHHHHHHDYDIPTTASENLYFQGELDYKDHDGDYKDHDIDYKDDDDK A0A0S3ANR1 ADENOSINE-5'-DIPHOSPHATE 0.000427201 2 ADP singleParticle particle 1.2 7.5 100.0 Tris HCl 150.0 NaCl 1.0 Magnesium chloride 1.0 EDTA 5.0 Glycerol C-flat COPPER GRAPHENE CONTINUOUS GLOW DISCHARGE
The grids were negatively glow discharged
 ETHANE 95 277 FEI VITROBOT MARK IV
The C-flat grids were coated with grphene oxide, in house and the sample was applied two times inside the vitrobot chamber.
the particles are NRC2 purified from plant after over expression. This was suspended in buffer and cryogrids were made on graphene oxide backing
 TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 1.5 2.7 105000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K3 (6k x 4k) 1 6000 2.6 50.0 1
Tbhe autopick program picked so many particles including non-protein stuffs
Abinitio model from Relion
 1 C2 BACK PROJECTION 3.9 FSC 0.143 CUT-OFF RELION 229347 PROJECTION MATCHING RELION PROJECTION MATCHING 3 200000.0 RELION 4 emd_19121.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 211.968 211.968 211.968 90.0 90.0 90.0 X Y Z -0.012051321 0.022530898 0.000101284684 0.0007619272 0.828 0.828 0.828 0.0034 AUTHOR Please use contour for 0.0034 for atom inclusion. This covers all the main chain atoms in the model 1-880 AlphaFold in silico model
This is the full length sequence of NRC
 FLEXIBLE FIT CC REAL 100.0 emd_19121_msk_1.map emd_19121_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 211.968 211.968 211.968 90.0 90.0 90.0 X Y Z -0.0060798246 0.013740859 0.00004580859 0.00083456194 0.828 0.828 0.828 AUTHOR emd_19121_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 211.968 211.968 211.968 90.0 90.0 90.0 X Y Z -0.006258597 0.013648757 0.000045772565 0.0008319659 0.828 0.828 0.828 AUTHOR