<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1894" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2011-04-13</deposition>
         <header_release>2011-04-21</header_release>
         <map_release>2011-12-01</map_release>
         <update>2012-08-29</update>
      </key_dates>
      <title>Cryo-EM structure of alphaB-crystallin 24mer</title>
      <authors_list>
         <author>Braun N</author>
         <author>Zacharias M</author>
         <author>Peschek J</author>
         <author>Kastenmueller A</author>
         <author>Hanzlik M</author>
         <author>Haslbeck M</author>
         <author>Buchner J</author>
         <author>Weinkauf S</author>
      </authors_list>
      <keywords>cryo electron microscopy, alphaB crystallin, molecular chaperone, protein aggregation, small heat shock protein, hybrid method</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Braun N</author>
               <author order="2">Zacharias M</author>
               <author order="3">Peschek J</author>
               <author order="4">Kastenmueller A</author>
               <author order="5">Hanzlik M</author>
               <author order="6">Haslbeck M</author>
               <author order="7">Buchner J</author>
               <author order="8">Weinkauf S</author>
               <title>Multiple molecular architectures of the eye lens chaperone Alpha beta-crystallin elucidated by a triple hybrid approach</title>
               <journal>PROC.NAT.ACAD.SCI.USA</journal>
               <volume>108</volume>
               <first_page>20491</first_page>
               <last_page>20496</last_page>
               <year>2011</year>
               <external_references type="PUBMED">22143763</external_references>
               <external_references type="DOI">doi:10.1073/pnas.1111014108</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
      <pdb_list>
         <pdb_reference>
            <pdb_id>2ygd</pdb_id>
            <relationship>
               <in_frame>FULLOVERLAP</in_frame>
            </relationship>
         </pdb_reference>
      </pdb_list>
   </crossreferences>
   <sample>
      <name>Human alphaB crystallin</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Human alphaB crystallin</name>
            <oligomeric_state>Tetrahedral 24mer</oligomeric_state>
            <number_unique_components>1</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">0.485</experimental>
               <theoretical units="MDa">0.485</theoretical>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="Human alphaB crystallin">AlphaB crystallin</name>
            <natural_source database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>Human</synonym_organism>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.485</theoretical>
            </molecular_weight>
            <number_of_copies>24</number_of_copies>
            <oligomeric_state>24mer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism>Echerichia coli</recombinant_organism>
               <recombinant_plasmid>pET28b</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               <external_references type="INTERPRO">IPR012273</external_references>
            </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.2</concentration>
               <buffer>
                  <ph>7.4</ph>
                  <details>PBS buffer</details>
               </buffer>
               <staining>
                  <type>NEGATIVE</type>
                  <details>Vitrification</details>
               </staining>
               <grid>
                  <details>Quantifoil multi A (400 mesh copper grid)</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">50</chamber_humidity>
                  <instrument>OTHER</instrument>
                  <method>Blot for 1 second before plunging</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>JEOL 2010HT</microscope>
               <illumination_mode>SPOT SCAN</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>LAB6</electron_source>
               <acceleration_voltage units="kV">120</acceleration_voltage>
               <nominal_defocus_min units="&#181;m">0.6</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">1.5</nominal_defocus_max>
               <nominal_magnification>50000.0</nominal_magnification>
               <calibrated_magnification>47000.0</calibrated_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <temperature>
                  <temperature_average units="K">100</temperature_average>
               </temperature>
               <image_recording_list>
                  <image_recording>
                     <digitization_details>
                        <scanner>OTHER</scanner>
                        <sampling_interval units="&#181;m">8.47</sampling_interval>
                     </digitization_details>
                     <number_real_images>33</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">10</average_electron_dose_per_image>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Eucentric</specimen_holder>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <ctf_correction>
               <details>Each micrograph, phase flipping</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>T</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">9.4</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>Imagic</name>
                  </software>
               </software_list>
               <number_images_used>17560</number_images_used>
            </final_reconstruction>
            <final_two_d_classification>
               <number_classes>878</number_classes>
            </final_two_d_classification>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="8193">
      <file>emd_1894.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>128</col>
         <row>128</row>
         <sec>128</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>128</x>
         <y>128</y>
         <z>128</z>
      </spacing>
      <cell>
         <a units="&#8491;">230.4</a>
         <b units="&#8491;">230.4</b>
         <c units="&#8491;">230.4</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>0.0</minimum>
         <maximum>0.0804485</maximum>
         <average>0.00482793</average>
         <std>0.00703659</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">1.8</x>
         <y units="&#8491;">1.8</y>
         <z units="&#8491;">1.8</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.004</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Volume map of human  alphaB-crystallin 24mer</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1894::::</details>
   </map>
   <interpretation>
      <modelling_list>
         <modelling>
            <initial_model>
               <access_code>2KLR</access_code>
            </initial_model>
            <details>PDB ID 2KLR was used for residues 69-150. Structure-elements for the remaining C- and N-termini were obtained by the found EM-Structure and structure prediction tools (fitted to the EM-Volume)</details>
            <refinement_space>REAL</refinement_space>
         </modelling>
      </modelling_list>
   </interpretation>
</emd>