<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1877" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2011-02-16</deposition>
         <header_release>2011-02-18</header_release>
         <map_release>2011-04-21</map_release>
         <update>2012-10-24</update>
      </key_dates>
      <title>CryoEM structure of the chromatin remodelling factor ISW1a bound to a mononucleosome (45N29)</title>
      <authors_list>
         <author>Frouws TD</author>
         <author>Richmond TJ</author>
      </authors_list>
      <keywords>Nucleosome,chromatin remodelling factor, ISW1a, ISWI</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Yamada K</author>
               <author order="2">Frouws TD</author>
               <author order="3">Angst B</author>
               <author order="4">Fitzgerald DJ</author>
               <author order="5">DeLuca C</author>
               <author order="6">Schimmele K</author>
               <author order="7">Sargent DF</author>
               <author order="8">Richmond TJ</author>
               <title>Structure and mechanism of the chromatin remodelling factor ISW1a.</title>
               <journal>NATURE</journal>
               <volume>472</volume>
               <first_page>448</first_page>
               <last_page>453</last_page>
               <year>2011</year>
               <external_references type="PUBMED">21525927</external_references>
               <external_references type="DOI">doi:10.1038/nature09947</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Chromatin remodelling factor ISW1a (delta ATPase) bound to a mononucleosome (with 45 and 29 bp extensions).</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Chromatin remodelling factor ISW1a (delta ATPase) bound to a mononucleosome (with 45 and 29 bp extensions).</name>
            <oligomeric_state>Monomer</oligomeric_state>
            <number_unique_components>2</number_unique_components>
            <molecular_weight>
               <theoretical units="MDa">0.38</theoretical>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="Nucleosome">Nucleosome</name>
            <natural_source database="NCBI">
               <organism ncbi="8355">Xenopus laevis</organism>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">256</theoretical>
            </molecular_weight>
            <details>Nucleosomes consist of recombinant xenopus histones H2A,H2B,H3,H4, reconstituted onto '601' DNA with 45 and 29 bp extensions.</details>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="469008">Escherichia coli BL21(DE3)</recombinant_organism>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="2">
            <name synonym="Remodelling factor">ISW1a</name>
            <natural_source database="NCBI">
               <organism ncbi="4932">Saccharomyces cerevisiae</organism>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">120</theoretical>
            </molecular_weight>
            <details>Recombinant yeast ISW1a (delta ATPase) expressed with MultiBac system</details>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="7108">Spodoptera frugiperda</recombinant_organism>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">3.5</concentration>
               <buffer>
                  <ph>7.5</ph>
                  <details>10mM TrisCl, 10mM KCl, 0.1mM EDTA</details>
               </buffer>
               <grid>
                  <details>C-flat 224</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">90</chamber_humidity>
                  <chamber_temperature units="K">100</chamber_temperature>
                  <instrument>FEI VITROBOT MARK II</instrument>
                  <details>Vitrification instrument: Vitribot MKII</details>
                  <method>0 offset, 4 sec blot, 1 sec drain</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TECNAI F20</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">200</acceleration_voltage>
               <nominal_cs units="mm">2.0</nominal_cs>
               <nominal_defocus_min units="&#181;m">1.5</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">4.5</nominal_defocus_max>
               <nominal_magnification>80000.0</nominal_magnification>
               <calibrated_magnification>51606.0</calibrated_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <temperature>
                  <temperature_average units="K">100</temperature_average>
               </temperature>
               <specialist_optics>
                  <energy_filter>
                     <name>Gatan</name>
                  </energy_filter>
               </specialist_optics>
               <details>Low dose</details>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">GENERIC GATAN</film_or_detector_model>
                     <digitization_details>
                        <sampling_interval units="&#181;m">14</sampling_interval>
                     </digitization_details>
                     <average_electron_dose_per_image units="e/&#8491;^2">20</average_electron_dose_per_image>
                     <bits_per_pixel>16.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Eucentric</specimen_holder>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>Semi-automated picking in EMAN BOXER</details>
            <ctf_correction>
               <details>Class averages</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">22.0</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>SPIDER</name>
                  </software>
               </software_list>
               <details>Start model created by common-lines, then iterated with projection matching.</details>
               <number_images_used>13206</number_images_used>
            </final_reconstruction>
            <final_angle_assignment>
               <details>theta 90, phi 180</details>
            </final_angle_assignment>
            <final_two_d_classification>
               <number_classes>195</number_classes>
            </final_two_d_classification>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="8193">
      <file>emd_1877.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>128</col>
         <row>128</row>
         <sec>128</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>128</x>
         <y>128</y>
         <z>128</z>
      </spacing>
      <cell>
         <a units="&#8491;">345.6</a>
         <b units="&#8491;">345.6</b>
         <c units="&#8491;">345.6</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.0718889</minimum>
         <maximum>0.170402</maximum>
         <average>0.000116232</average>
         <std>0.0137858</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">2.7</x>
         <y units="&#8491;">2.7</y>
         <z units="&#8491;">2.7</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.05</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Surface rendering of 45N29-ISW1a (delta ATPase)</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1877::::</details>
   </map>
   <interpretation>
      <modelling_list>
         <modelling>
            <initial_model>
               <access_code>1KX5</access_code>
            </initial_model>
            <refinement_protocol>RIGID BODY FIT</refinement_protocol>
            <software_list>
               <software>
                  <name>Chimera</name>
               </software>
            </software_list>
            <details>Manually fitted in Chimera, and missing DNA segments were built in.</details>
            <refinement_space>REAL</refinement_space>
         </modelling>
      </modelling_list>
   </interpretation>
</emd>