<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1858" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2011-01-17</deposition>
         <header_release>2011-04-21</header_release>
         <map_release>2011-04-21</map_release>
         <update>2013-12-11</update>
      </key_dates>
      <title>Structure of the ribosome-SecYE complex in  the membrane environment</title>
      <authors_list>
         <author>Frauenfeld J</author>
         <author>Gumbart J</author>
         <author>Sluis EO</author>
         <author>Funes S</author>
         <author>Gartmann M</author>
         <author>Beatrix B</author>
         <author>Mielke T</author>
         <author>Berninghausen O</author>
         <author>Becker T</author>
         <author>Schulten K</author>
         <author>Beckmann R</author>
      </authors_list>
      <keywords>
         </keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Frauenfeld J</author>
               <author order="2">Gumbart J</author>
               <author order="3">Sluis EO</author>
               <author order="4">Funes S</author>
               <author order="5">Gartmann M</author>
               <author order="6">Beatrix B</author>
               <author order="7">Mielke T</author>
               <author order="8">Berninghausen O</author>
               <author order="9">Becker T</author>
               <author order="10">Schulten K</author>
               <author order="11">Beckmann R</author>
               <title>Cryo-EM structure of the ribosome-SecYE complex in the membrane environment.</title>
               <journal>NAT.STRUCT.MOL.BIOL.</journal>
               <volume>18</volume>
               <first_page>614</first_page>
               <last_page>621</last_page>
               <year>2011</year>
               <external_references type="PUBMED">21499241</external_references>
               <external_references type="DOI">doi:10.1038/nsmb.2026</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
      <pdb_list>
         <pdb_reference>
            <pdb_id>4v6m</pdb_id>
            <relationship>
               <in_frame>FULLOVERLAP</in_frame>
            </relationship>
         </pdb_reference>
      </pdb_list>
   </crossreferences>
   <sample>
      <name>An active E.coli SecYEG complex embedded in a lipid bilayer (Nanodisc), bound to a translating E.coli ribosome</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>An active E.coli SecYEG complex embedded in a lipid bilayer (Nanodisc), bound to a translating E.coli ribosome</name>
            <details>The heterotrimeric SecYEG complex was embedded in a lipid bilayer (nascent HDL, Nanodisc)</details>
            <oligomeric_state>70S ribosome bound to one copy of the E.coli SecYEG complex in a lipid bilayer</oligomeric_state>
            <number_unique_components>2</number_unique_components>
            <molecular_weight>
               <theoretical units="MDa">2.7</theoretical>
            </molecular_weight>
         </sample_supramolecule>
         <complex_supramolecule supramolecule_id="1">
            <name synonym="70S RNC">70S ribosome nascent chain complex</name>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <natural_source database="NCBI">
               <organism ncbi="562">Escherichia coli</organism>
            </natural_source>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <molecular_weight>
               <theoretical units="MDa">2.7</theoretical>
            </molecular_weight>
            <ribosome-details>ribosome-prokaryote: ALL</ribosome-details>
         </complex_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <ligand macromolecule_id="1">
            <name synonym="SecYEG embedded in a Nanodisc">Nd-SecYEG</name>
            <natural_source database="NCBI">
               <organism ncbi="562">Escherichia coli</organism>
               <cellular_location>Plasma membrane</cellular_location>
            </natural_source>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>Heterotrimeric</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
            </recombinant_expression>
         </ligand>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <buffer>
                  <ph>7.2</ph>
                  <details>20 mM Hepes (pH 7.2), 100 mM KOAc, 10 mM Mg(OAc)2, 1 mM DTT, 250 microg/ml chloramphenicol</details>
               </buffer>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <instrument>OTHER</instrument>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI POLARA 300</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_cs units="mm">2.26</nominal_cs>
               <nominal_defocus_min units="&#181;m">1.0</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">4.5</nominal_defocus_max>
               <nominal_magnification>39000.0</nominal_magnification>
               <calibrated_magnification>38000.0</calibrated_magnification>
               <specimen_holder_model>OTHER</specimen_holder_model>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>PRIMESCAN</scanner>
                        <sampling_interval units="&#181;m">4.76</sampling_interval>
                     </digitization_details>
                     <average_electron_dose_per_image units="e/&#8491;^2">22</average_electron_dose_per_image>
                     <details>Scanned at 5334 dpi</details>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>FEI Polara cartridge system</specimen_holder>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <ctf_correction>
               <details>Defocus group volumes</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <resolution res_type="BY AUTHOR" units="&#8491;">7.1</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>SPIDER</name>
                  </software>
               </software_list>
               <number_images_used>85664</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="128001">
      <file>emd_1858.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>320</col>
         <row>320</row>
         <sec>320</sec>
      </dimensions>
      <origin>
         <col>-160</col>
         <row>-160</row>
         <sec>-159</sec>
      </origin>
      <spacing>
         <x>320</x>
         <y>320</y>
         <z>320</z>
      </spacing>
      <cell>
         <a units="&#8491;">396</a>
         <b units="&#8491;">396</b>
         <c units="&#8491;">396</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>Y</fast>
         <medium>X</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-3.53351</minimum>
         <maximum>6.82334</maximum>
         <average>0.0507365</average>
         <std>0.456442</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">1.2375</x>
         <y units="&#8491;">1.2375</y>
         <z units="&#8491;">1.2375</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.5</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>This map represents an E.coli 70S ribosome carrying an elongation arrested nascent chain of 118 amino acid residues, with the first 102 residues representing the N-terminus of the membrane protein FtsQ with the signal anchor, a tRNA in the P-site and the E.coli SecYEG complex embedded in a E.coli lipid bilayer (Nanodisc).</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1858::::</details>
   </map>
</emd>