2026-09-30 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY PDBe PDBe 2023-09-16 2026-09-30 2026-09-30 2026-09-30 Wellcome Trust 110145/Z/15/Z United Kingdom Asymmetric structure of Satellite Tobacco Necrosis Virus-Like Particle with PS2/3 gRNA Javed A Mata PC Stockley P STNV, CryoEM, VIRUS LIKE PARTICLE Wroblewski E Patel N Javed A Mata CP Chandler-Bostock R Lekshmi BG Ulamec SM Clark S Phillips SEV Ranson NA Twarock R Stockley PG Visualizing Viral RNA Packaging Signals in Action. J Mol Biol UK 436 168765 2024 39214281 doi:10.1016/j.jmb.2024.168765 1089-8638 0070 JMOBAK 8qkp FULLOVERLAP EMDB EMD-18469 associated EM volume
Asymmetric structure of Satellite Tobacco Necrosis Virus-Like Particle with PS2/3 gRNA
 Satellite tobacco necrosis virus 1 Satellite tobacco necrosis virus 1 0 1 Satellite tobacco necrosis virus 1 Nicotiana tabacum 180.0 1 VIRUS-LIKE PARTICLE SPECIES false false Capsid protein Satellite tobacco necrosis virus 1 0.020766530999999998 60 Escherichia coli LEVO RKSATMRAVKRMINTHLEHKRFALINSGNTNATAGTVQNLSNGIIQGDDINQRSGDQVRIVSHKLHVRGTAITVSQTFRF IWFRDNMNRGTTPTVLEVLNTANFMSQYNPITLQQKRFTILKDVTLNCSLTGESIKDRIINLPGQLVNYNGATAVAASNG PGAIFMLQIGDSLVGLWDSSYEAVYTDA P03606 CALCIUM ION 4.0078e-05 92 CA ADENOSINE -5'-THIO-MONOPHOSPHATE 0.00036328699999999995 44 SRA URIDINE-5'-PHOSPHOROTHIOATE 0.000340247 44 SSU GUANOSINE-5'-MONOPHOSPHATE 0.000363221 22 G CYTIDINE-5'-MONOPHOSPHATE 0.000323197 22 C singleParticle particle 0.5 7.5 50.0 Hepes 3.0 CaCl2 Calcium Chloride PELCO Ultrathin Carbon with Lacey Carbon 400 CARBON CONTINUOUS 0.30000000000000004 GLOW DISCHARGE AIR ETHANE 100 277 FEI VITROBOT MARK IV
Purified STNV-1 VLP with PS 2/3 genomic RNA.
 TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 1.0 3.75 75000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON III (4k x 4k) INTEGRATING 1 9979 47.6 1 509873 Gctf 1.06 PHASE FLIPPING AND AMPLITUDE CORRECTION Ab-intio C1 map generated from dataset. 1 C1 FOURIER SPACE 5.26 FSC 0.143 CUT-OFF cryoSPARC 4.2 81619 MAXIMUM LIKELIHOOD cryoSPARC 4.2 MAXIMUM LIKELIHOOD cryoSPARC 4.2 5 40000.0 RELION 3.0 emd_18469.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 252 252 252 0 0 0 252 252 252 268.38 268.38 268.38 90.0 90.0 90.0 X Y Z -0.93896127 1.7589722 0.051123172 0.19068791 1.065 1.065 1.065 0.4 AUTHOR Sharpened map 4bcu PDB experimental model RIGID BODY FIT Cross-correlation coefficient REAL 265.100000000000023 emd_18469_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 252 252 252 0 0 0 252 252 252 268.38 268.38 268.38 90.0 90.0 90.0 X Y Z -0.39752305 1.1849501 0.051123172 0.16802718 1.065 1.065 1.065 AUTHOR Unsharpened map. emd_18469_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 252 252 252 0 0 0 252 252 252 268.38 268.38 268.38 90.0 90.0 90.0 X Y Z -0.60283864 1.2364126 0.015735207 0.18111877 1.065 1.065 1.065 AUTHOR Half map 2 emd_18469_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 252 252 252 0 0 0 252 252 252 268.38 268.38 268.38 90.0 90.0 90.0 X Y Z -0.56132543 1.304298 0.015890485 0.18115374 1.065 1.065 1.065 AUTHOR Half map 1