2024-07-17 REL PDBe PDBe PDBe 2023-09-07 2024-07-17 2024-07-17 2024-07-17 Swedish Research Council 2019-01190 Sweden Cancerfonden 20 1102 PjF Sweden Novo Nordisk Foundation NNF21OC0070008 Denmark Novo Nordisk Foundation NNF22OC0078104 Denmark Other government 2018-01562 Swedish Research Council 2022-03681 Sweden Swedish Research Council 2018-03406 Sweden Cancerfonden 20 1287 PjF Sweden Swedish Research Council 2022-01398 Sweden Cancerfonden 20 0264 PjF Sweden Other government 2021-00430 Sweden cryo-EM structure of TcdB-FZD7 Kinsolving J Bous J micriobiology, class F G protein-coupled receptors, CROP dynamics, TOXIN Kinsolving J Bous J Kozielewicz P Kosenina S Shekhani R Gratz L Masuyer G Wang Y Stenmark P Dong M Schulte G Structural and functional insight into the interaction of Clostridioides difficile toxin B and FZD 7. Cell Rep US 43 113727 113727 2024 38308843 doi:10.1016/j.celrep.2024.113727 2211-1247 EMD-18374 consensus EM volume Complex of Frizzled-7 and Clostridioides difficile toxin B Complex of Frizzled-7 and Clostridioides difficile toxin B 0 1 Clostridioides difficile TcdB-FZD7 complex Clostridioides difficile mdklvhlnqrgkctmslvnrkqlekmanvrfrtqedeyvaildaleeyhnmsentvvekylklkdinsltdiyidtykksgrnkalkkfkeylvtevl elknnnltpveknlhfvwiggqindtainyinqwkdvnsdynvnvfydsnaflintlkktvvesaindtlesfrenlndprfdynkffrkrmeiiydk qknfinyykaqreenpeliiddivktylsneyskeidelntyieeslnkitqnsgndvrnfeefkngesfnlyeqelverwnlaaasdilrisalkeigg myldvdmlpgiqpdlfesiekpssvtvdfwemtkleaimkykeyipeytsehfdmldeevqssfesvlasksdkseifsslgdmeasplevkiaf nskgiinqglisvkdsycsnlivkqienrykilnnslnpaisedndfntttntfidsimaeanadngrfmmelgkylrvgffpdvkttinlsgpeayaaa yqdllmfkegsmnihlieadlrnfeisktnisqsteqemaslwsfddarakaqfeeykrnyfegslgeddnldfsqnivvdkeyllekisslarsserg yihyivqlqgdkisyeaacnlfaktpydsvlfqkniedseiayyynpgdgeiqeidkykipsiisdrpkikltfighgkdefntdifagfdvdslsteieaa idlakedispksieinllgcnmfsysinveetypgklllkvkdkiselmpsisqdsiivsanqyevrinsegrrelldhsgewinkeesiikdisskeyisf npkenkitvksknlpelstllqeirnnsnssdieleekvmlteceinvisnidtqiveerieeaknltsdsinyikdefkliesisdalcdlkqqneledsh fisfedisetdegfsirfinketgesifvetektifseyanhiteeiskikgtifdtvngklvkkvnldtthevntlnaaffiqslieynsskeslsnlsvamkv qvyaqlfstglntitdaakvvelvstaldetidllptlseglpiiatiidgvslgaaikelsetsdpllrqeieakigimavnlttattaiitsslgiasgfsillvpla gisagipslvnnelvlrdkatkvvdyfkhvslvetegvftllddkimmpqddlviseidfnnnsivlgkceiwrmeggsghtvtddidhffsapsityr ephlsiydvlevqkeeldlskdlmvlpnapnrvfawetgwtpglrslendgtklldrirdnyegefywryfafiadalittlkpryedtnirinldsntrs fivpiitteyireklsysfygsggtyalslsqynmginielsesdvwiidvdnvvrdvtiesdkikkgdliegilstlsieenkiilnsheinfsgevngsngfv sltfsileginaiievdllsksykllisgelkilmlnsnhiqqkidyigfnselqknipysfvdsegkengfingstkeglfvselpdvvliskvymddskpsf gyysnnlkdvkvitkdnvniltgyylkddikislsltlqdektiklnsvhldesgvaeilkfmnrkgntntsdslmsflesmniksifvnflqsnikfildan fiisgttsigqfeficdendniqpyfikfntletnytlyvgnrqnmivepnydlddsgdisstvinfsqkylygidscvnkvvispniytdeinitpvyetn ntypevivldanyinekinvnindlsiryvwsndgndfilmstseenkvsqvkirfvnvfkdktlanklsfnfsdkqdvpvseiilsftpsyyedgligy dlglvslynekfyinnfgmmvsgliyindslyyfkppvnnlitgfvtvgddkyyfnpinggaasigetiiddknyyfnqsgvlqtgvfstedgfkyfapa ntldenlegeaidftgkliideniyyfddnyrgavewkeldgemhyfspetgkafkglnqigdykyyfnsdgvmqkgfvsindnkhyfddsgvmk vgyteidgkhfyfaengemqigvfntedgfkyfahhnedlgneegeeisysgilnfnnkiyyfddsftavvgwkdledgskyyfdedtaeayiglsli ndgqyyfnddgimqvgfvtindkvfyfsdsgiiesgvqniddnyfyiddngivqigvfdtsdgykyfapantvndniygqaveysglvrvgedvyyf getytietgwiydmenesdkyyfnpetkkackginliddikyyfdekgimrtglisfennnyyfnengemqfgyiniedkmfyfgedgvmqigvf ntpdgfkyfahqntldenfegesinytgwldldekryyftdeyiaatgsviidgeeyyfdpdtaqlvisegyrphaglrgshhhhhh other Priestia megaterium DSM 319 singleParticle particle 0.272 7.5 0.1 TRIS-HCl tris hydrochloride 0.2 NaCl sodium chloride 0.002 LMNG lauryl maltose neopentyl glycol 0.0002 CHS cholesteryl hemisuccinate tris salt 0.0002 GDN glyco diosgenin
100 mM TRIS-HCl pH 7.5 200 mM NaCl 0.002% LMNG 0.0002% CHS 0.0002% GDN
 ETHANE 100 277 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.6 2.0 105000.0 NITROGEN 20 GATAN K3 (6k x 4k) 1 17269 3.0 50.453
Images collected in super-resolution mode, faster acquisition mode, with 4 exposures per hole
 1 5240176 2.89 FSC 0.143 CUT-OFF cryoSPARC 4.2.1 151285 MAXIMUM LIKELIHOOD cryoSPARC 4.2.1 MAXIMUM LIKELIHOOD cryoSPARC 4.2.1 3 100000.0 cryoSPARC 4.2.1 emd_18411.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 500 500 500 0 0 0 500 500 500 579.6 579.6 579.6 90.0 90.0 90.0 X Y Z -0.5477111 1.3667343 -0.0005583895 0.016896766 1.1592 1.1592 1.1592 0.227 AUTHOR AlphaFold in silico model RIGID BODY FIT REAL emd_18411_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 500 500 500 0 0 0 500 500 500 579.6 579.6 579.6 90.0 90.0 90.0 X Y Z -0.8711172 1.7208436 -0.00008329575 0.10218543 1.1592 1.1592 1.1592 AUTHOR emd_18411_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 500 500 500 0 0 0 500 500 500 579.6 579.6 579.6 90.0 90.0 90.0 X Y Z -1.0693934 1.7261256 -0.00007997975 0.102352425 1.1592 1.1592 1.1592 AUTHOR