2024-11-06 REL PDBe PDBe PDBe 2023-08-24 2024-07-24 2024-07-24 2024-11-06 H2020 Marie Curie Actions of the European Commission IF-2020-101026765-MEMTOR European Union European Research Council (ERC) AdG TENDO European Union Swiss National Science Foundation CRSII5_189996 METEORIC Switzerland Swiss National Science Foundation 310030_207754 Switzerland Native eisosome lattice bound to plasma membrane microdomain Kefauver JM Zou L Loewith RJ Desfosses A BAR domain, plasma membrane microdomain, membrane curvature, native biochemistry, LIPID BINDING PROTEIN Kefauver JM Hakala M Zou L Alba J Espadas J Tettamanti MG Gajic J Gabus C Campomanes P Estrozi LF Sen NE Vanni S Roux A Desfosses A Loewith R Cryo-EM architecture of a near-native stretch-sensitive membrane microdomain. Nature UK 632 664 671 2024 39048819 doi:10.1038/s41586-024-07720-6 1476-4687 0006 NATUAS Afonine PV Poon BK Read RJ Sobolev OV Terwilliger TC Urzhumtsev A Adams PD Real-space refinement in PHENIX for cryo-EM and crystallography. Acta Crystallogr D Struct Biol 74 531 544 2018 29872004 doi:10.1107/S2059798318006551 2059-7983 8qb7 FULLOVERLAP Helical lattice of native Pil1/Lsp1 protein bound to plasma membrane microdomain Helical lattice of native Pil1/Lsp1 protein bound to plasma membrane microdomain 0 1 Saccharomyces cerevisiae TB50 eisosome plasma membrane Sphingolipid long chain base-responsive protein PIL1 Saccharomyces cerevisiae TB50 0.038393042999999995 14 LEVO MHRTYSLRNSRAPTASQLQNPPPPPSTTKGRFFGKGGLAYSFRRSAAGAFGPELSRKLSQLVKIEKNVLRSMELTANERR DAAKQLSIWGLENDDDVSDITDKLGVLIYEVSELDDQFIDRYDQYRLTLKSIRDIEGSVQPSRDRKDKITDKIAYLKYKD PQSPKIEVLEQELVRAEAESLVAEAQLSNITRSKLRAAFNYQFDSIIEHSEKIALIAGYGKALLELLDDSPVTPGETRPA YDGYEASKQIIIDAESALNEWTLDSAQVKPTLSFKQDYEDFEPEEGEEEEEEDGQGRWSEDEQEDGQIEEPEQEEEGAVE EHEQVGHQQSESLPQQTTA P53252 singleParticle helicalArray 7.0
50mM PIPES pH 7, 300mM NaCl, 1mM CHAPS, 0.5mM DTT
 EMS Lacey Carbon COPPER 300 CARBON LACEY ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.8 1.8 GATAN K2 QUANTUM (4k x 4k) 40.0 1
Cylindrical map
 3.2 FSC 0.143 CUT-OFF cryoSPARC 4.1.2 2423944 MAXIMUM LIKELIHOOD RELION 3.0.8 MAXIMUM LIKELIHOOD cryoSPARC 4.1.2 emd_18307.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 339.712 339.712 339.712 90.0 90.0 90.0 X Y Z -3.8135464 5.48576 0.01581569 0.13591683 1.327 1.327 1.327 0.55 AUTHOR Native eisosome lattice - sharpened map P53252 AlphaFold in silico model emd_18307_additional_10.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 448 448 448 0 0 0 448 448 448 594.49603 594.49603 594.49603 90.0 90.0 90.0 X Y Z -0.007454832 0.029385323 0.0014328876 0.0033257962 1.327 1.327 1.327 AUTHOR Native eisosome helical map (C2, rise=11.00, twist=54.02) emd_18307_additional_9.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 448 448 448 0 0 0 448 448 448 594.49603 594.49603 594.49603 90.0 90.0 90.0 X Y Z -0.004045925 0.036352858 0.0012008662 0.003696321 1.327 1.327 1.327 AUTHOR Native eisosome helical map (C8, rise=37.41, twist=57.83) emd_18307_additional_8.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 448 448 448 0 0 0 448 448 448 594.49603 594.49603 594.49603 90.0 90.0 90.0 X Y Z -0.011273464 0.044225883 0.000970208 0.004159846 1.327 1.327 1.327 AUTHOR Native eisosome helical map (C1, rise=4.89, twist=46.59) emd_18307_additional_7.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 448 448 448 0 0 0 448 448 448 594.49603 594.49603 594.49603 90.0 90.0 90.0 X Y Z -0.013327755 0.047652505 0.0014309877 0.0041153803 1.327 1.327 1.327 AUTHOR Native eisosome helical map (C2, rise=10.02, twist=47.98) emd_18307_additional_6.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 448 448 448 0 0 0 448 448 448 594.49603 594.49603 594.49603 90.0 90.0 90.0 X Y Z -0.014883301 0.049278527 0.0011854093 0.004166599 1.327 1.327 1.327 AUTHOR Native eisosome helical map (C1, rise=5.2, twist=136.56) emd_18307_additional_5.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 448 448 448 0 0 0 448 448 448 594.49603 594.49603 594.49603 90.0 90.0 90.0 X Y Z -0.010226456 0.040472094 0.0013874448 0.0039124656 1.327 1.327 1.327 AUTHOR Native eisosome helical map (C1, rise=5.13, twist=49.32) emd_18307_additional_4.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 448 448 448 0 0 0 448 448 448 594.49603 594.49603 594.49603 90.0 90.0 90.0 X Y Z -0.013689591 0.04763703 0.0012556082 0.003908735 1.327 1.327 1.327 AUTHOR Native eisosome helical map (C1, rise=5.58, twist=53.51) emd_18307_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 448 448 448 0 0 0 448 448 448 594.49603 594.49603 594.49603 90.0 90.0 90.0 X Y Z -0.011999532 0.045130584 0.0014155636 0.0037605576 1.327 1.327 1.327 AUTHOR Native eisosome helical map (C7, rise=37.28, twist=36.72) emd_18307_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 448 448 448 0 0 0 448 448 448 594.49603 594.49603 594.49603 90.0 90.0 90.0 X Y Z -0.012613086 0.04451178 0.0009905688 0.004013718 1.327 1.327 1.327 AUTHOR Native eisosome helical map (C4, rise=21.27, twist=50.99) emd_18307_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 339.712 339.712 339.712 90.0 90.0 90.0 X Y Z -0.58812493 1.6885079 0.015815688 0.07432892 1.327 1.327 1.327 AUTHOR Native eisosome lattice - unsharpened map emd_18307_additional_11.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 339.712 339.712 339.712 90.0 90.0 90.0 X Y Z -0.0022481047 2.5414543 0.005490896 0.04688103 1.327 1.327 1.327 AUTHOR Native eisosome lattice - deepEMhancer sharpened map emd_18307_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 339.712 339.712 339.712 90.0 90.0 90.0 X Y Z -0.62283576 1.6674067 0.0074994117 0.079124995 1.327 1.327 1.327 AUTHOR Native eisosome lattice - half map A emd_18307_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 339.712 339.712 339.712 90.0 90.0 90.0 X Y Z -0.5665554 1.7040579 0.007551082 0.07916948 1.327 1.327 1.327 AUTHOR Native eisosome lattice - half map B