2024-03-06 REL PDBe PDBe PDBe 2023-08-17 2024-01-10 2024-01-10 2024-03-06 Biotechnology and Biological Sciences Research Council (BBSRC) EP/V051474/1 United Kingdom Medical Research Council (MRC, United Kingdom) MC UP 1201/31 United Kingdom Human Frontier Science Program (HFSP) RGY0074/2021 France Engineering and Physical Sciences Research Council EP/V026623/1 United Kingdom The Vallee Foundation Inc. United States European Molecular Biology Organization (EMBO) European Union Leverhulme Trust United Kingdom The Lister Institute of Preventive Medicine United Kingdom Wellcome Trust 104633/Z/14/Z United Kingdom Royal Society NIF/R1/192285 United Kingdom ESIBD structure of beta-galactosidase Esser T Boehning J Bharat TAM Rauschenbach S Lactase, Beta-galactosidase, cryo-EM, native MS, HYDROLASE Esser TK Bohning J Onur A Chinthapalli DK Eriksson L Grabarics M Fremdling P Konijnenberg A Makarov A Botman A Peter C Benesch JLP Robinson CV Gault J Baker L Bharat TAM Rauschenbach S Cryo-EM of soft-landed beta-galactosidase: Gas-phase and native structures are remarkably similar. Sci Adv US 10 eadl4628 eadl4628 2024 38354247 doi:10.1126/sciadv.adl4628 2375-2548 8q7y FULLOVERLAP Beta-galactosidase from E. coli; tetrameric complex Beta-galactosidase from E. coli; tetrameric complex 0 1
Sigma Aldrich Product Number G3153
Escherichia coli 0.465 Beta-galactosidase Escherichia coli K-12 0.1165725 4 Escherichia coli K-12 LEVO MTMITDSLAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWRFAWFPAPEAVPESWLECDLP EADTVVVPSNWQMHGYDAPIYTNVTYPITVNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWV GYGQDSRLPSEFDLSAFLRAGENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISDFHVATRFNDDFSRAV LEAEVQMCGELRDYLRVTVSLWQGETQVASGTAPFGGEIIDERGGYADRVTLRLNVENPKLWSAEIPNLYRAVVELHTAD GTLIEAEACDVGFRVVRIENGLLLLNGKPLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWY TLCDRYGLYVVDEANIETHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRWIKSVD PSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLILCEYAHAMGNSLGGFAKYWQAFRQY PRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGDTPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVT SEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPESAGQLWLTVRVVQPNATAWSEAGHISAWQQ WRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQFNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVSEAT RIDPNAWVERWKAAGHYQAEAALLQCTADTLADAVLITTAHAWQHQGKTLFISRKTYRIDGSGQMAITVDVEVASDTPHP ARIGLNCQLAQVAERVNWLGLGPQENYPDRLTAACFDRWDLPLSDMYTPYVFPSENGLRCGTRELNYGPHQWRGDFQFNI SRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRYHYQLVWCQK P00722 singleParticle particle 6.9
Soft-landed sample
 Quantifoil R2/1 COPPER 400 CARBON HOLEY OTHER
Soft-landed as described in manuscript.
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.0 2.5 105000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Bioquantum 20 GATAN K3 (6k x 4k) 4100 34.0 1
Ab-initio model generated in cryoSPARC
 D2 2.6 FSC 0.143 CUT-OFF cryoSPARC Non-uniform refinement 463000 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD cryoSPARC
CryoSPARC
 emd_18244.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 416 416 416 0 0 0 416 416 416 345.28 345.28 345.28 90.0 90.0 90.0 X Y Z -2.5955462 3.6415358 0.001471602 0.03986202 0.83 0.83 0.83 0.158 AUTHOR Sharpened and local resolution-filtered 6DRV PDB experimental model
Initial flexible fitting was performed using ISOLDE and Real-Space Refinement was performed using PHENIX.
REAL emd_18244_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 416 416 416 0 0 0 416 416 416 345.28 345.28 345.28 90.0 90.0 90.0 X Y Z -2.1168692 3.1347249 0.0007186257 0.043164868 0.83 0.83 0.83 AUTHOR Sharpened emd_18244_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 416 416 416 0 0 0 416 416 416 345.28 345.28 345.28 90.0 90.0 90.0 X Y Z -0.24346383 0.6412597 0.00064705126 0.018354354 0.83 0.83 0.83 AUTHOR emd_18244_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 416 416 416 0 0 0 416 416 416 345.28 345.28 345.28 90.0 90.0 90.0 X Y Z -0.2586312 0.6620942 0.0006302373 0.018357866 0.83 0.83 0.83 AUTHOR