<?xml version="1.0" encoding="UTF-8"?>
<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="https://ftp.ebi.ac.uk/pub/databases/em_ebi/emdb_related/emdb-schemas/emdb_schemas/v3/v3_0_9_0/emdb.xsd" version="3.0.9.0" emdb_id="EMD-18194">
    <admin>
        <current_status>
            <date>2023-12-20</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2023-08-14</deposition>
            <header_release>2023-08-30</header_release>
            <map_release>2023-08-30</map_release>
            <update>2023-12-20</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>German Research Foundation (DFG)</funding_body>
                <code>419120233</code>
                <country>Germany</country>
            </grant_reference>
            <grant_reference>
                <funding_body>EIPOD fellowship under Marie Sklodowska-Curie Actions COFUND</funding_body>
                <code>664726</code>
                <country>Germany</country>
            </grant_reference>
            <grant_reference>
                <funding_body>H2020 Marie Curie Actions of the European Commission</funding_body>
                <code>101028297</code>
                <country>European Union</country>
            </grant_reference>
            <grant_reference>
                <funding_body>Human Frontier Science Program (HFSP)</funding_body>
                <code>CDA00045/2019</code>
                <country>France</country>
            </grant_reference>
            <grant_reference>
                <funding_body>Other private</funding_body>
                <code>Biomedicum Helsinki Foundation</code>
                <country>Finland</country>
            </grant_reference>
            <grant_reference>
                <funding_body>Other private</funding_body>
                <code>Orion Foundation</code>
                <country>Finland</country>
            </grant_reference>
        </grant_support>
        <title>Cryo-electron tomogram of GEM2-labelled Mito-EGFP in HeLa cells</title>
        <authors_list>
            <author ORCID="0000-0001-9568-1782">Fung HKH</author>
            <author ORCID="0000-0003-2530-7714">Hayashi Y</author>
            <author ORCID="0000-0002-6991-2142">Salo VT</author>
            <author ORCID="0000-0001-9759-1369">Babenko A</author>
            <author ORCID="0000-0003-2523-5132">Zagoriy I</author>
            <author ORCID="0000-0003-3136-6382">Brunner A</author>
            <author ORCID="0000-0001-5909-701X">Ellenberg J</author>
            <author ORCID="0000-0003-2176-8337">Mueller CW</author>
            <author ORCID="0000-0002-1193-4648">Cuylen-Haering S</author>
            <author ORCID="0000-0001-6968-041X">Mahamid J</author>
        </authors_list>
        <keywords>Encapsulin, Protein Engineering, Synechococcus elongatus Srp1, intracellular labeling of mitochondrial-targeted EGFP, CYTOSOLIC PROTEIN</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author ORCID="0000-0001-9568-1782" order="1">Fung HKH</author>
                    <author ORCID="0000-0002-6991-2142" order="2">Hayashi Y</author>
                    <author order="3">Salo VT</author>
                    <author order="4">Babenko A</author>
                    <author ORCID="0000-0003-2523-5132" order="5">Zagoriy I</author>
                    <author order="6">Brunner A</author>
                    <author ORCID="0000-0001-5909-701X" order="7">Ellenberg J</author>
                    <author ORCID="0000-0003-2176-8337" order="8">Muller CW</author>
                    <author ORCID="0000-0002-1193-4648" order="9">Cuylen-Haering S</author>
                    <author ORCID="0000-0001-6968-041X" order="10">Mahamid J</author>
                    <title>Genetically encoded multimeric tags for subcellular protein localization in cryo-EM.</title>
                    <journal_abbreviation>Nat.Methods</journal_abbreviation>
                    <country>US</country>
                    <volume>20</volume>
                    <first_page>1900</first_page>
                    <last_page>1908</last_page>
                    <year>2023</year>
                    <external_references type="PUBMED">37932397</external_references>
                    <external_references type="DOI">doi:10.1038/s41592-023-02053-0</external_references>
                    <external_references type="ISSN">1548-7105</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-16303</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Cryo-focused ion beam lamella of a HeLa cell expressing an engineered genetically encoded multimeric tag GEM2 coupled to stably expressed Mito-EGFP upon treatment with rapalog</name>
        <supramolecule_list>
            <cell_supramolecule supramolecule_id="1">
                <name>Cryo-focused ion beam lamella of a HeLa cell expressing an engineered genetically encoded multimeric tag GEM2 coupled to stably expressed Mito-EGFP upon treatment with rapalog</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="1140">Synechococcus elongatus PCC 7942 = FACHB-805</organism>
                </natural_source>
            </cell_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>tomography</method>
            <aggregation_state>cell</aggregation_state>
            <specimen_preparation_list>
                <tomography_preparation preparation_id="1">
                    <buffer>
                        <ph>7.4</ph>
                    </buffer>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <instrument>LEICA EM GP</instrument>
                    </vitrification>
                    <sectioning>
                        <focused_ion_beam>
                            <instrument>OTHER</instrument>
                            <ion>OTHER</ion>
                            <voltage>30</voltage>
                            <current>0.05</current>
                            <duration>480</duration>
                            <temperature units="K">87</temperature>
                            <initial_thickness>1000</initial_thickness>
                            <final_thickness>200</final_thickness>
                            <details>The value given for _em_focused_ion_beam.instrument is TFS Aquilos. This is not in a list of allowed values {'DB235', 'OTHER'} so OTHER is written into the XML file.</details>
                        </focused_ion_beam>
                    </sectioning>
                </tomography_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <tomography_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_defocus_min units="µm">1.5</nominal_defocus_min>
                    <nominal_defocus_max units="µm">4.0</nominal_defocus_max>
                    <specialist_optics>
                        <energy_filter>
                            <name>GIF Bioquantum</name>
                            <slit_width units="eV">20</slit_width>
                        </energy_filter>
                    </specialist_optics>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K3 BIOQUANTUM (6k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/Å^2">2.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </tomography_microscopy>
            </microscopy_list>
            <tomography_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <final_reconstruction>
                    <algorithm>BACK PROJECTION</algorithm>
                    <resolution units="Å" res_type="BY AUTHOR">13.7</resolution>
                    <software_list>
                        <software>
                            <version>1.3.1</version>
                        </software>
                    </software_list>
                    <details>Tilt-series alignment and tomogram reconstruction performed with AreTomo version 1.3.1, doi: 10.1016/j.yjsbx.2022.100068.</details>
                    <number_images_used>53</number_images_used>
                </final_reconstruction>
            </tomography_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="2943361">
        <file>emd_18194.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>1022</col>
            <row>1440</row>
            <sec>500</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>1022</x>
            <y>1440</y>
            <z>500</z>
        </spacing>
        <cell>
            <a units="Å">14001.399</a>
            <b units="Å">19728.0</b>
            <c units="Å">6850.0</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-198735.89000000001397</minimum>
            <maximum>89517.059999999997672</maximum>
            <average>-4.772659</average>
            <std>9734.845999999999549</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">13.7</x>
            <y units="Å">13.7</y>
            <z units="Å">13.7</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-18194::::</label>
        <annotation_details>Unfiltered tomogram corresponding to tilt series TS_010.mrc of Dataset 2 (220330) of EMPIAR-11561</annotation_details>
    </map>
</emd>
