2024-09-25 REL PDBe PDBe PDBe 2023-08-11 2023-12-27 2023-12-27 2024-09-25 Max Planck Society Germany Focused refinment of 11-protofilament microtubule from C. elegans Schioetz OH Kaiser CJO Klumpe S Klebl DP Schneider J Beck F Plitzko JM Caenorhabditis, elegans, touch receptor cell, microtubule, L1, larva, C. elegans, STRUCTURAL PROTEIN Schiotz OH Kaiser CJO Klumpe S Morado DR Poege M Schneider J Beck F Klebl DP Thompson C Plitzko JM Serial Lift-Out: sampling the molecular anatomy of whole organisms. Nat.Methods US 21 1684 1692 2024 38110637 doi:10.1038/s41592-023-02113-5 1548-7105 EMD-17241 other EM volume C. elegans L1 larva, CGC strain NK2476 C. elegans L1 larva, CGC strain NK2476 0 Caenorhabditis elegans NK2476 Whole L1 larva subtomogramAveraging tissue 7.5
M9 buffer + 20% Ficoll 400
 NITROGEN
High pressure freezing, Leica EM ICE.
Developmentally arrested L1 larvae
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 1.5 4.5 64000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN TFS Selectris X 10 FEI FALCON IV (4k x 4k) 4096 4096 41 0.73 3.23 1 C1 BACK PROJECTION 13.0 FSC 0.143 CUT-OFF RELION 3.1 20516 12 20220 RELION 3.1 MAXIMUM LIKELIHOOD STOPGAP 0.7 RELION 3.0 emd_18187.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 64 64 64 0 0 0 64 64 64 241.92 241.92 241.92 90.0 90.0 90.0 X Y Z -0.277347 0.50585276 0.016305096 0.09144963 3.78 3.78 3.78 0.25 AUTHOR Postprocessed density masked emd_18187_msk_1.map emd_18187_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 64 64 64 0 0 0 64 64 64 241.92 241.92 241.92 90.0 90.0 90.0 X Y Z -0.277347 0.50585276 0.009460295 0.10297642 3.78 3.78 3.78 AUTHOR postprocessed density unmasked emd_18187_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 64 64 64 0 0 0 64 64 64 241.92 241.92 241.92 90.0 90.0 90.0 X Y Z -0.21325949 0.43230203 0.009444879 0.095258325 3.78 3.78 3.78 AUTHOR Raw density without postprocessing emd_18187_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 64 64 64 0 0 0 64 64 64 241.92 241.92 241.92 90.0 90.0 90.0 X Y Z -0.3464598 0.55364525 0.009425701 0.105004594 3.78 3.78 3.78 AUTHOR Half map 2 emd_18187_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 64 64 64 0 0 0 64 64 64 241.92 241.92 241.92 90.0 90.0 90.0 X Y Z -0.38199103 0.5960784 0.0094948895 0.105052695 3.78 3.78 3.78 AUTHOR Half set 1